Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65997 | Canola | nucleus | 19.37 | 80.0 |
| CDX89363 | Canola | nucleus | 82.05 | 78.69 |
| CDX94372 | Canola | nucleus | 81.77 | 78.2 |
| AT4G26110.1 | Thale cress | nucleus | 81.2 | 76.61 |
| CDY50468 | Canola | nucleus | 77.78 | 72.22 |
| CDY50472 | Canola | nucleus | 76.07 | 71.39 |
| CDY50473 | Canola | nucleus | 36.18 | 67.55 |
| CDY21663 | Canola | nucleus | 66.38 | 66.76 |
| CDY67089 | Canola | nucleus | 69.52 | 65.07 |
| KRH37411 | Soybean | nucleus | 67.24 | 64.66 |
| VIT_11s0016g02050.t01 | Wine grape | nucleus | 70.66 | 64.25 |
| CDY69405 | Canola | nucleus | 68.09 | 64.25 |
| CDX82688 | Canola | nucleus | 69.23 | 63.95 |
| KRH12415 | Soybean | endoplasmic reticulum | 65.81 | 63.64 |
| PGSC0003DMT400055114 | Potato | nucleus | 67.81 | 63.64 |
| VIT_09s0002g02330.t01 | Wine grape | nucleus | 68.95 | 63.52 |
| CDY60738 | Canola | nucleus | 68.66 | 63.09 |
| Solyc12g008940.1.1 | Tomato | nucleus | 66.95 | 62.83 |
| KRH02690 | Soybean | nucleus | 67.52 | 62.53 |
| Solyc05g018810.2.1 | Tomato | nucleus | 66.95 | 62.5 |
| KRH19202 | Soybean | nucleus | 66.67 | 62.4 |
| PGSC0003DMT400000751 | Potato | nucleus | 64.96 | 61.62 |
| CDX97517 | Canola | nucleus | 43.3 | 55.07 |
| CDY23642 | Canola | nucleus | 45.01 | 53.74 |
| CDY52429 | Canola | nucleus | 37.89 | 44.93 |
| CDX83813 | Canola | cytosol | 19.66 | 27.27 |
| CDX96698 | Canola | cytosol | 19.37 | 26.88 |
| CDY19242 | Canola | cytosol | 19.37 | 26.25 |
| CDY26724 | Canola | cytosol | 17.38 | 24.11 |
Protein Annotations
| MapMan:12.2.6 | Gene3D:3.30.1120.90 | GO:A0A078IGF8 | UniProt:A0A078IGF8 | EnsemblPlants:CDY50005 | ProteinID:CDY50005 |
| ProteinID:CDY50005.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00094214001 | InterPro:NAP-like_sf |
| InterPro:NAP_family | PFAM:PF00956 | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF98 | SUPFAM:SSF143113 | UniParc:UPI0004EE3F00 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g12120DBnaC08g12120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGF8]
Coordinates
chrLK032874:+:53492..56032
Molecular Weight (calculated)
40353.3 Da
IEP (calculated)
4.131
GRAVY (calculated)
-1.023
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNHKDNFSL ADLTSDEDRA GLVNALKNKL AGHSSDVLEN LTPQVRARVD ALKDIQSQHD ELEAKFREER AVLEAKYEKL YQPLYAKRYE IVNGTTEIEL
101: TPEDTKMDEG DDKTAEEKGV PSFWLTALQN NEVTSEEVTE HDEEALEYLK DIKWCKTEEP KGFKLEFLFD SNPFFKNNVL TKSYHVIDED EPLIEKAIGT
201: EIDWYPGKCL TQRIVKKKPK KGSTNTKPVT KMEDCESFFN FFNPPEVPDE DEDIDEDRAE ELQNTMELDY DIGSTIRNKI IPHAVSWFTA EAMEGQEFDI
301: DDDEDDDDIE EDEDDDDEME EDSKTKKKKG GRSQIVGVGQ QGERPPDCKQ Q
101: TPEDTKMDEG DDKTAEEKGV PSFWLTALQN NEVTSEEVTE HDEEALEYLK DIKWCKTEEP KGFKLEFLFD SNPFFKNNVL TKSYHVIDED EPLIEKAIGT
201: EIDWYPGKCL TQRIVKKKPK KGSTNTKPVT KMEDCESFFN FFNPPEVPDE DEDIDEDRAE ELQNTMELDY DIGSTIRNKI IPHAVSWFTA EAMEGQEFDI
301: DDDEDDDDIE EDEDDDDEME EDSKTKKKKG GRSQIVGVGQ QGERPPDCKQ Q
001: MSNDKDSFNV SDLTAALKDE DRAGLVNALK NKLQNLAGQR SDVLENLTPN VRKRVDALRD IQSQHDELEA KFREERAILE AKYQTLYQPL YVKRYEIVNG
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ
Arabidopsis Description
NAP1;1Nucleosome assembly protein 1;1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.