CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032122.1-P	Field mustard	plastid	100.0	100.0
CDY20281	Canola	plastid	95.95	95.95
CDX76841	Canola	plastid	89.19	91.67
CDY34801	Canola	plastid	90.54	91.16
AT2G24090.1	Thale cress	plastid	80.41	82.07
KRH02999	Soybean	plastid	60.81	65.22
VIT_16s0115g00310.t01	Wine grape	plastid	63.51	61.44
KRH72345	Soybean	plastid	60.81	61.22
VIT_16s0115g00080.t01	Wine grape	plastid	62.84	60.78
GSMUA_AchrUn_...	Banana	plastid	52.7	55.32
GSMUA_Achr1P10170_001	Banana	plastid	56.76	54.55
PGSC0003DMT400029160	Potato	plastid	53.38	52.32
Solyc07g006000.2.1	Tomato	nucleus, plastid	53.38	50.97
Os06t0647100-01	Rice	extracellular	49.32	50.0
TraesCS7D01G499800.1	Wheat	plastid	47.3	50.0
Zm00001d046555_P001	Maize	plastid	47.3	48.95
EER88723	Sorghum	plastid	46.62	48.59
TraesCSU01G093800.1	Wheat	plastid	45.95	48.57
HORVU7Hr1G114170.2	Barley	cytosol, mitochondrion, plastid	46.62	44.23
TraesCS7B01G421100.1	Wheat	cytosol	46.62	33.17

Protein Annotations

MapMan:17.7.2.1.30	Gene3D:2.40.50.530	GO:A0A078HSG2	UniProt:A0A078HSG2	EnsemblPlants:CDY39693	ProteinID:CDY39693
ProteinID:CDY39693.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00068284001	HAMAP:MF_00514
PFAM:PF01632	PRINTS:PR00064	ScanProsite:PS00936	PANTHER:PTHR33343	InterPro:Ribosomal_L35	InterPro:Ribosomal_L35_CS
InterPro:Ribosomal_L35_non-mt	InterPro:Ribosomal_L35_sf	SUPFAM:SSF143034	TIGRFAMs:TIGR00001	UniParc:UPI0002544982	SEG:seg

Description

BnaA04g14100D50S ribosomal protein L35 [Source:UniProtKB/TrEMBL;Acc:A0A078HSG2]

Coordinates

chrLK032454:+:252432..253761

Molecular Weight (calculated)

16516.4 Da

IEP (calculated)

12.636

GRAVY (calculated)

-0.478

Length

148 amino acids

Sequence
(BLAST)

001: MASLSMASVI LRFSPLRSSP PKIPTHGSVQ FARLSSSSLA STHSISGLRA VLPQKISTVV SQNPQRLRSL TVFAHKGYKM KTHKASAKRF RVTGRGKIVR
101: RRSGKQHLLA KKNNKRKLRL SKMHEVSRSD YDNVIGALPY LKVNRKAT

Best Arabidopsis Sequence Match ( AT2G24090.1 )
(BLAST)

001: MASLSMASVN VSFCHPLRSS SPKVSLRSSV HFATSLSSSH SISGLRAVLP LKISTVASPN SQKLHSFTVF AHKGYKMKTH KASAKRFRVT GRGKIVRRRS
101: GKQHLLAKKN NKRKLRLSKM TEVNRSDYDN VIGALPYLKV NRKAT

Arabidopsis Description

RPL3550S ribosomal protein L35, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.