Factsheet for GSMUA_AchrUn_randomP13020_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P10170_001	Banana	plastid	65.25	59.74
CDX76841	Canola	plastid	55.32	54.17
Bra039227.1-P	Field mustard	plastid	55.32	53.06
CDY34801	Canola	plastid	55.32	53.06
Bra032122.1-P	Field mustard	plastid	55.32	52.7
CDY20281	Canola	plastid	55.32	52.7
CDY39693	Canola	plastid	55.32	52.7
KRH02999	Soybean	plastid	51.06	52.17
AT2G24090.1	Thale cress	plastid	53.19	51.72
Zm00001d046555_P001	Maize	plastid	51.77	51.05
EER88723	Sorghum	plastid	51.06	50.7
VIT_16s0115g00310.t01	Wine grape	plastid	52.48	48.37
VIT_16s0115g00080.t01	Wine grape	plastid	51.77	47.71
KRH72345	Soybean	plastid	49.65	47.62
Os06t0647100-01	Rice	extracellular	48.23	46.58
TraesCS7D01G499800.1	Wheat	plastid	44.68	45.0
TraesCSU01G093800.1	Wheat	plastid	43.97	44.29
PGSC0003DMT400029160	Potato	plastid	44.68	41.72
Solyc07g006000.2.1	Tomato	nucleus, plastid	45.39	41.29
HORVU7Hr1G114170.2	Barley	cytosol, mitochondrion, plastid	44.68	40.38
TraesCS7B01G421100.1	Wheat	cytosol	44.68	30.29

Protein Annotations

MapMan:17.7.2.1.30	Gene3D:2.40.50.530	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSMUA_AchrUn_randomG13020_001
EnsemblPlants:GSMUA_AchrUn_randomP13020_001	EnsemblPlants:GSMUA_AchrUn_randomT13020_001	UniProt:M0U8R1	HAMAP:MF_00514	PFAM:PF01632	PRINTS:PR00064
InterPro:Ribosomal_L35	InterPro:Ribosomal_L35_non-mt	InterPro:Ribosomal_L35_sf	SUPFAM:SSF143034	TIGRFAMs:TIGR00001	UniParc:UPI00029486B5

Description

ribosomal protein L35, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13020_001]

Coordinates

chrchrUn_random:+:63148460..63150246

Molecular Weight (calculated)

15979.1 Da

IEP (calculated)

11.935

GRAVY (calculated)

-0.300

Length

141 amino acids

Sequence
(BLAST)

001: MALSLKNKLS SSTAMSCSPL LLRRDPFPIP SSQKHSALTV FAAKCYKMKT HKVPSLYVFW SFLIHLTGKF PSLMGLKASA KRFRVMGRGK IVRRRAGKQH
101: LLAKKNTKRK LRLSKMHPVN KSDYDNVIGA LPYLKVNRHA T

Best Arabidopsis Sequence Match ( AT2G24090.1 )
(BLAST)

001: MASLSMASVN VSFCHPLRSS SPKVSLRSSV HFATSLSSSH SISGLRAVLP LKISTVASPN SQKLHSFTVF AHKGYKMKTH KASAKRFRVT GRGKIVRRRS
101: GKQHLLAKKN NKRKLRLSKM TEVNRSDYDN VIGALPYLKV NRKAT

Arabidopsis Description

RPL3550S ribosomal protein L35, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.