Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G499800.1 | Wheat | plastid | 97.86 | 97.86 |
| HORVU7Hr1G114170.2 | Barley | cytosol, mitochondrion, plastid | 95.71 | 85.9 |
| Os06t0647100-01 | Rice | extracellular | 74.29 | 71.23 |
| TraesCS7B01G421100.1 | Wheat | cytosol | 97.86 | 65.87 |
| EER88723 | Sorghum | plastid | 62.86 | 61.97 |
| Zm00001d046555_P001 | Maize | plastid | 61.43 | 60.14 |
| GSMUA_Achr1P10170_001 | Banana | plastid | 54.29 | 49.35 |
| CDX76841 | Canola | plastid | 49.29 | 47.92 |
| VIT_16s0115g00310.t01 | Wine grape | plastid | 50.71 | 46.41 |
| CDY34801 | Canola | plastid | 48.57 | 46.26 |
| Bra039227.1-P | Field mustard | plastid | 48.57 | 46.26 |
| AT2G24090.1 | Thale cress | plastid | 47.86 | 46.21 |
| CDY39693 | Canola | plastid | 48.57 | 45.95 |
| CDY20281 | Canola | plastid | 48.57 | 45.95 |
| Bra032122.1-P | Field mustard | plastid | 48.57 | 45.95 |
| VIT_16s0115g00080.t01 | Wine grape | plastid | 50.0 | 45.75 |
| KRH02999 | Soybean | plastid | 45.0 | 45.65 |
| GSMUA_AchrUn_... | Banana | plastid | 44.29 | 43.97 |
| KRH72345 | Soybean | plastid | 45.71 | 43.54 |
| PGSC0003DMT400029160 | Potato | plastid | 46.43 | 43.05 |
| Solyc07g006000.2.1 | Tomato | nucleus, plastid | 46.43 | 41.94 |
Protein Annotations
| MapMan:17.7.2.1.30 | Gene3D:2.40.50.530 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0019538 |
| HAMAP:MF_00514 | PFAM:PF01632 | PRINTS:PR00064 | ScanProsite:PS00936 | PANTHER:PTHR33343 | InterPro:Ribosomal_L35 |
| InterPro:Ribosomal_L35_CS | InterPro:Ribosomal_L35_non-mt | InterPro:Ribosomal_L35_sf | SUPFAM:SSF143034 | SignalP:SignalP-noTM | TIGRFAMs:TIGR00001 |
| EnsemblPlantsGene:TraesCSU01G093800 | EnsemblPlants:TraesCSU01G093800.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:-:83312391..83313656
Molecular Weight (calculated)
14744.4 Da
IEP (calculated)
12.475
GRAVY (calculated)
-0.094
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSLSLARL ALPPVLQALP GRRQAHSALA FPANSFFGAP LAVAAAGAAA LSPAAPLPRS LAVVAAGKGY KMKTHKASAK RFRVTGTGKI VRRCAGKQHL
101: LSKKNAKRRK RLSKTVQVNK SDYSNVMGAL PYLKVNKKAG
101: LSKKNAKRRK RLSKTVQVNK SDYSNVMGAL PYLKVNKKAG
001: MASLSMASVN VSFCHPLRSS SPKVSLRSSV HFATSLSSSH SISGLRAVLP LKISTVASPN SQKLHSFTVF AHKGYKMKTH KASAKRFRVT GRGKIVRRRS
101: GKQHLLAKKN NKRKLRLSKM TEVNRSDYDN VIGALPYLKV NRKAT
101: GKQHLLAKKN NKRKLRLSKM TEVNRSDYDN VIGALPYLKV NRKAT
Arabidopsis Description
RPL3550S ribosomal protein L35, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ55]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.