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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76841 Canola plastid 81.38 81.94
Bra039227.1-P Field mustard plastid 82.07 80.95
CDY34801 Canola plastid 82.07 80.95
CDY39693 Canola plastid 82.07 80.41
Bra032122.1-P Field mustard plastid 82.07 80.41
CDY20281 Canola plastid 79.31 77.7
KRH02999 Soybean plastid 55.86 58.7
KRH72345 Soybean plastid 58.62 57.82
VIT_16s0115g00310.t01 Wine grape plastid 60.0 56.86
VIT_16s0115g00080.t01 Wine grape plastid 59.31 56.21
GSMUA_AchrUn_... Banana plastid 51.72 53.19
GSMUA_Achr1P10170_001 Banana plastid 55.17 51.95
PGSC0003DMT400029160 Potato plastid 53.79 51.66
Solyc07g006000.2.1 Tomato nucleus, plastid 53.79 50.32
Os06t0647100-01 Rice extracellular 50.34 50.0
Zm00001d046555_P001 Maize plastid 48.28 48.95
EER88723 Sorghum plastid 47.59 48.59
TraesCS7D01G499800.1 Wheat plastid 46.9 48.57
TraesCSU01G093800.1 Wheat plastid 46.21 47.86
HORVU7Hr1G114170.2 Barley cytosol, mitochondrion, plastid 47.59 44.23
TraesCS7B01G421100.1 Wheat cytosol 46.9 32.69
Protein Annotations
MapMan:17.7.2.1.30Gene3D:2.40.50.530EntrezGene:816943UniProt:A0A178VXN9ProteinID:AAC63677.1ProteinID:AAM15097.1
ProteinID:AEC07528.1ArrayExpress:AT2G24090EnsemblPlantsGene:AT2G24090RefSeq:AT2G24090TAIR:AT2G24090RefSeq:AT2G24090-TAIR-G
EnsemblPlants:AT2G24090.1TAIR:AT2G24090.1EMBL:AY065235EMBL:AY096532ProteinID:CAA60774.1GO:GO:0003674
GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0015934GO:GO:0019538GO:GO:0030529HAMAP:MF_00514
RefSeq:NP_850047.1ProteinID:OAP11090.1PFAM:PF01632PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PRINTS:PR00064ScanProsite:PS00936PANTHER:PTHR33343
UniProt:Q8VZ55InterPro:Ribosomal_L35InterPro:Ribosomal_L35_CSInterPro:Ribosomal_L35_non-mtInterPro:Ribosomal_L35_sfSUPFAM:SSF143034
TIGRFAMs:TIGR00001UniParc:UPI00000A5592SEG:seg:::
Description
RPL3550S ribosomal protein L35, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ55]
Coordinates
chr2:+:10241875..10243674
Molecular Weight (calculated)
16089.8 Da
IEP (calculated)
12.361
GRAVY (calculated)
-0.428
Length
145 amino acids
Sequence
(BLAST)
001: MASLSMASVN VSFCHPLRSS SPKVSLRSSV HFATSLSSSH SISGLRAVLP LKISTVASPN SQKLHSFTVF AHKGYKMKTH KASAKRFRVT GRGKIVRRRS
101: GKQHLLAKKN NKRKLRLSKM TEVNRSDYDN VIGALPYLKV NRKAT
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.