CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39693	Canola	plastid	95.95	95.95
CDX76841	Canola	plastid	89.19	91.67
CDY34801	Canola	plastid	90.54	91.16
AT2G24090.1	Thale cress	plastid	77.7	79.31
KRH02999	Soybean	plastid	59.46	63.77
VIT_16s0115g00310.t01	Wine grape	plastid	64.19	62.09
VIT_16s0115g00080.t01	Wine grape	plastid	63.51	61.44
KRH72345	Soybean	plastid	60.81	61.22
GSMUA_AchrUn_...	Banana	plastid	52.7	55.32
PGSC0003DMT400029160	Potato	plastid	54.73	53.64
GSMUA_Achr1P10170_001	Banana	plastid	55.41	53.25
Solyc07g006000.2.1	Tomato	nucleus, plastid	54.73	52.26
TraesCS7D01G499800.1	Wheat	plastid	47.3	50.0
Os06t0647100-01	Rice	extracellular	48.65	49.32
Zm00001d046555_P001	Maize	plastid	47.3	48.95
EER88723	Sorghum	plastid	46.62	48.59
TraesCSU01G093800.1	Wheat	plastid	45.95	48.57
HORVU7Hr1G114170.2	Barley	cytosol, mitochondrion, plastid	46.62	44.23
TraesCS7B01G421100.1	Wheat	cytosol	46.62	33.17

Protein Annotations

MapMan:17.7.2.1.30	Gene3D:2.40.50.530	GO:A0A078G4D9	UniProt:A0A078G4D9	EnsemblPlants:CDY20281	ProteinID:CDY20281
ProteinID:CDY20281.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00012193001	HAMAP:MF_00514
PFAM:PF01632	PRINTS:PR00064	ScanProsite:PS00936	PANTHER:PTHR33343	InterPro:Ribosomal_L35	InterPro:Ribosomal_L35_CS
InterPro:Ribosomal_L35_non-mt	InterPro:Ribosomal_L35_sf	SUPFAM:SSF143034	TIGRFAMs:TIGR00001	UniParc:UPI0004EBF100	SEG:seg

Description

BnaC04g36750D50S ribosomal protein L35 [Source:UniProtKB/TrEMBL;Acc:A0A078G4D9]

Coordinates

chrLK032105:+:226200..227543

Molecular Weight (calculated)

16574.4 Da

IEP (calculated)

12.533

GRAVY (calculated)

-0.505

Length

148 amino acids

Sequence
(BLAST)

001: MASLSMASVI LRFSPPRSSS PKFPTHGSVQ FARFSSSSLA STHCISGLRA VLPQKISTVV SQNPQRLRSL TVFAHKGYKM KTHKASAKRF RVTGRGKIVR
101: RRSGKQHLLA KKNNKRKLRL SKMHEVSRSD YDNVIGALPY LKVNRKAT

Best Arabidopsis Sequence Match ( AT2G24090.1 )
(BLAST)

001: MASLSMASVN VSFCHPLRSS SPKVSLRSSV HFATSLSSSH SISGLRAVLP LKISTVASPN SQKLHSFTVF AHKGYKMKTH KASAKRFRVT GRGKIVRRRS
101: GKQHLLAKKN NKRKLRLSKM TEVNRSDYDN VIGALPYLKV NRKAT

Arabidopsis Description

RPL3550S ribosomal protein L35, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.