Factsheet for Zm00001d046555_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88723	Sorghum	plastid	97.2	97.89
Os06t0647100-01	Rice	extracellular	63.64	62.33
TraesCS7D01G499800.1	Wheat	plastid	60.84	62.14
TraesCSU01G093800.1	Wheat	plastid	60.14	61.43
HORVU7Hr1G114170.2	Barley	cytosol, mitochondrion, plastid	60.84	55.77
KRH02999	Soybean	plastid	51.05	52.9
GSMUA_AchrUn_...	Banana	plastid	51.05	51.77
GSMUA_Achr1P10170_001	Banana	plastid	54.55	50.65
Bra039227.1-P	Field mustard	plastid	50.35	48.98
CDY34801	Canola	plastid	50.35	48.98
CDX76841	Canola	plastid	48.95	48.61
KRH72345	Soybean	plastid	49.65	48.3
AT2G24090.1	Thale cress	plastid	48.95	48.28
Bra032122.1-P	Field mustard	plastid	48.95	47.3
CDY39693	Canola	plastid	48.95	47.3
CDY20281	Canola	plastid	48.95	47.3
VIT_16s0115g00080.t01	Wine grape	plastid	49.65	46.41
VIT_16s0115g00310.t01	Wine grape	plastid	49.65	46.41
TraesCS7B01G421100.1	Wheat	cytosol	61.54	42.31
PGSC0003DMT400029160	Potato	plastid	44.06	41.72
Solyc07g006000.2.1	Tomato	nucleus, plastid	44.06	40.65

Protein Annotations

MapMan:17.7.2.1.30	Gene3D:2.40.50.530	EntrezGene:542046	EMBL:AJ431192	ProteinID:AQL04514.1	EMBL:BT039221
ProteinID:CAD24032.1	EMBL:EU959516	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	HAMAP:MF_00514	PFAM:PF01632	PRINTS:PR00064	ScanProsite:PS00936	PANTHER:PTHR33343
UniProt:Q84K87	InterPro:Ribosomal_L35	InterPro:Ribosomal_L35_CS	InterPro:Ribosomal_L35_non-mt	InterPro:Ribosomal_L35_sf	SUPFAM:SSF143034
TIGRFAMs:TIGR00001	UniParc:UPI000000D6EB	EnsemblPlantsGene:Zm00001d046555	EnsemblPlants:Zm00001d046555_P001	EnsemblPlants:Zm00001d046555_T001	SEG:seg

Description

embryo specific18 embryo specific18

Coordinates

chr9:-:95832622..95834867

Molecular Weight (calculated)

15113.8 Da

IEP (calculated)

12.216

GRAVY (calculated)

-0.280

Length

143 amino acids

Sequence
(BLAST)

001: MALSLSLARP APLAVSAGAG ARKLPAASLA FPAKSFFGAP LAATAASVAS PLPRKPATST TSLEVVAAGK KGYKMKTHKA SAKRFRVTGR GKIVRRCAGK
101: QHLLAKKNTK RKKRLSKMVQ VNKSDYDNVT GALPYLKVNR KAN

Best Arabidopsis Sequence Match ( AT2G24090.1 )
(BLAST)

001: MASLSMASVN VSFCHPLRSS SPKVSLRSSV HFATSLSSSH SISGLRAVLP LKISTVASPN SQKLHSFTVF AHKGYKMKTH KASAKRFRVT GRGKIVRRRS
101: GKQHLLAKKN NKRKLRLSKM TEVNRSDYDN VIGALPYLKV NRKAT

Arabidopsis Description

RPL3550S ribosomal protein L35, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.