Factsheet for VIT_16s0115g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0115g00080.t01	Wine grape	plastid	98.04	98.04
KRH72345	Soybean	plastid	62.09	64.63
CDX76841	Canola	plastid	60.78	64.58
CDY20281	Canola	plastid	62.09	64.19
Bra032122.1-P	Field mustard	plastid	61.44	63.51
CDY39693	Canola	plastid	61.44	63.51
Bra039227.1-P	Field mustard	plastid	60.13	62.59
CDY34801	Canola	plastid	60.13	62.59
KRH02999	Soybean	plastid	56.21	62.32
AT2G24090.1	Thale cress	plastid	56.86	60.0
GSMUA_Achr1P10170_001	Banana	plastid	54.9	54.55
PGSC0003DMT400029160	Potato	plastid	53.59	54.3
GSMUA_AchrUn_...	Banana	plastid	48.37	52.48
Solyc07g006000.2.1	Tomato	nucleus, plastid	52.94	52.26
TraesCSU01G093800.1	Wheat	plastid	46.41	50.71
TraesCS7D01G499800.1	Wheat	plastid	46.41	50.71
EER88723	Sorghum	plastid	47.06	50.7
Zm00001d046555_P001	Maize	plastid	46.41	49.65
Os06t0647100-01	Rice	extracellular	46.41	48.63
HORVU7Hr1G114170.2	Barley	cytosol, mitochondrion, plastid	45.75	44.87
TraesCS7B01G421100.1	Wheat	cytosol	47.06	34.62

Protein Annotations

EntrezGene:100252143	wikigene:100252143	MapMan:17.7.2.1.30	Gene3D:2.40.50.530	UniProt:A5BPA4	EMBL:AM466386
EMBL:AM483370	ProteinID:CAN63703	ProteinID:CAN63703.1	ProteinID:CAN77631	ProteinID:CAN77631.1	ProteinID:CCB49985
ProteinID:CCB49985.1	EMBL:FN595518	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0030529	EntrezGene:LOC100252143	wikigene:LOC100252143	HAMAP:MF_00514	PFAM:PF01632
PRINTS:PR00064	ScanProsite:PS00936	PANTHER:PTHR33343	InterPro:Ribosomal_L35	InterPro:Ribosomal_L35_CS	InterPro:Ribosomal_L35_non-mt
InterPro:Ribosomal_L35_sf	SUPFAM:SSF143034	SignalP:SignalP-noTM	TIGR:TC54475	TIGRFAMs:TIGR00001	UniParc:UPI000152170D
ArrayExpress:VIT_16s0115g00310	EnsemblPlantsGene:VIT_16s0115g00310	EnsemblPlants:VIT_16s0115g00310.t01	unigene:Vvi.180	unigene:Vvi.24571	RefSeq:XP_002264584
RefSeq:XP_002264584.1	RefSeq:XP_002267813	RefSeq:XP_002267813.1	SEG:seg	:	:

Description

50S ribosomal protein L35 [Source:UniProtKB/TrEMBL;Acc:A5BPA4]

Coordinates

chr16:+:3927646..3931115

Molecular Weight (calculated)

16892.7 Da

IEP (calculated)

12.428

GRAVY (calculated)

-0.395

Length

153 amino acids

Sequence
(BLAST)

001: MASATLMLSF SLRLPSSFSS PSSVRVPNEV VQFSPFSRAC SLKLSSSRNI SGFAPILPLR HSTLNSPSPS QPSSLTVVSA KGYKMKTHKA SAKRFRVTGR
101: GKIVRRRAGK QHLLAKKNAK RRLRLSKMHP VSRSDYDNVI GALPYLKVNR EAK

Best Arabidopsis Sequence Match ( AT2G24090.1 )
(BLAST)

001: MASLSMASVN VSFCHPLRSS SPKVSLRSSV HFATSLSSSH SISGLRAVLP LKISTVASPN SQKLHSFTVF AHKGYKMKTH KASAKRFRVT GRGKIVRRRS
101: GKQHLLAKKN NKRKLRLSKM TEVNRSDYDN VIGALPYLKV NRKAT

Arabidopsis Description

RPL3550S ribosomal protein L35, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.