Factsheet for Solyc07g006000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029160	Potato	plastid	96.13	98.68
KRH02999	Soybean	plastid	49.03	55.07
CDY20281	Canola	plastid	52.26	54.73
Bra039227.1-P	Field mustard	plastid	51.61	54.42
CDY34801	Canola	plastid	51.61	54.42
CDX76841	Canola	plastid	50.32	54.17
AT2G24090.1	Thale cress	plastid	50.32	53.79
KRH72345	Soybean	plastid	50.97	53.74
Bra032122.1-P	Field mustard	plastid	50.97	53.38
CDY39693	Canola	plastid	50.97	53.38
VIT_16s0115g00080.t01	Wine grape	plastid	52.26	52.94
VIT_16s0115g00310.t01	Wine grape	plastid	52.26	52.94
GSMUA_Achr1P10170_001	Banana	plastid	46.45	46.75
TraesCSU01G093800.1	Wheat	plastid	41.94	46.43
Os06t0647100-01	Rice	extracellular	43.23	45.89
TraesCS7D01G499800.1	Wheat	plastid	41.29	45.71
GSMUA_AchrUn_...	Banana	plastid	41.29	45.39
EER88723	Sorghum	plastid	40.65	44.37
Zm00001d046555_P001	Maize	plastid	40.65	44.06
HORVU7Hr1G114170.2	Barley	cytosol, mitochondrion, plastid	41.29	41.03
TraesCS7B01G421100.1	Wheat	cytosol	41.94	31.25

Protein Annotations

MapMan:17.7.2.1.30	Gene3D:2.40.50.530	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0030529	UniProt:K4CB71	HAMAP:MF_00514	PFAM:PF01632	PRINTS:PR00064
ScanProsite:PS00936	PANTHER:PTHR33343	InterPro:Ribosomal_L35	InterPro:Ribosomal_L35_CS	InterPro:Ribosomal_L35_non-mt	InterPro:Ribosomal_L35_sf
SUPFAM:SSF143034	EnsemblPlantsGene:Solyc07g006000.2	EnsemblPlants:Solyc07g006000.2.1	TIGRFAMs:TIGR00001	UniParc:UPI000276C3A1	SEG:seg

Description

50S ribosomal protein L35, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G24090) UniProtKB/Swiss-Prot;Acc:Q8VZ55]

Coordinates

chr7:-:847789..852012

Molecular Weight (calculated)

17004.7 Da

IEP (calculated)

11.943

GRAVY (calculated)

-0.490

Length

155 amino acids

Sequence
(BLAST)

001: MTLTMASSSS TSLFSTVLNF SPRKSTGFTC RTSVNIPSIA KKTSLSLSSS SNISSFAPIV FEKVSVAATP TNGNSKTLTV ECHKGYKMKT HKASAKRFKV
101: SGSGKIMRRR AGKQHLLRKK NTKRKNRLSK TVQVDRSDYN NVIGALPYLK VNRAK

Best Arabidopsis Sequence Match ( AT2G24090.1 )
(BLAST)

001: MASLSMASVN VSFCHPLRSS SPKVSLRSSV HFATSLSSSH SISGLRAVLP LKISTVASPN SQKLHSFTVF AHKGYKMKTH KASAKRFRVT GRGKIVRRRS
101: GKQHLLAKKN NKRKLRLSKM TEVNRSDYDN VIGALPYLKV NRKAT

Arabidopsis Description

RPL3550S ribosomal protein L35, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.