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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY37071 Canola nucleus 98.73 98.73
Bra039308.1-P Field mustard nucleus 97.47 97.47
CDX74770 Canola nucleus 94.94 94.94
CDY18894 Canola nucleus 94.94 94.94
AT2G45860.1 Thale cress nucleus 94.94 94.94
KRH65065 Soybean nucleus 77.22 75.31
KRH48163 Soybean nucleus 75.95 74.07
Os02t0824400-01 Rice nucleus 69.62 69.62
PGSC0003DMT400000471 Potato nucleus 69.62 68.75
GSMUA_Achr4P11990_001 Banana nucleus 70.89 68.29
Solyc01g094470.2.1 Tomato nucleus 69.62 67.9
EES07787 Sorghum nucleus 68.35 67.5
Zm00001d051860_P001 Maize nucleus 68.35 67.5
TraesCS6A01G403600.1 Wheat nucleus 67.09 66.25
TraesCS6B01G447500.1 Wheat nucleus 67.09 66.25
TraesCS6D01G387100.1 Wheat nucleus 67.09 66.25
VIT_15s0046g02920.t01 Wine grape nucleus 67.09 65.43
HORVU0Hr1G017740.1 Barley cytosol, endoplasmic reticulum 67.09 31.93
Protein Annotations
EnsemblPlants:CDY27353EnsemblPlantsGene:GSBRNA2T00037290001PANTHER:PTHR36745ProteinID:CDY27353ProteinID:CDY27353.1SEG:seg
UniParc:UPI0004EBB0EEUniProt:A0A078GRV1MapMan:35.2:::
Description
BnaC04g50520DBnaC04g50520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRV1]
Coordinates
chrLK032203:+:221724..222340
Molecular Weight (calculated)
8962.2 Da
IEP (calculated)
11.155
GRAVY (calculated)
-1.438
Length
79 amino acids
Sequence
(BLAST)
1: MSKKNNLAKR KKQHEYNLQK EKEIQDKKIK KLHANKNKMK IDGSGKKKKG GFSVGKKKLK TKLTPAAKAK AAQAMELDK
Best Arabidopsis Sequence Match ( AT2G45860.1 )
(BLAST)
1: MSKKNNLAKR KKQHEYNLQK EKELQDKKIK KLHANKNKMK VDGSGKKKKG GFSVGKKKLK TKLTPTAKAK AAQAMELDN
Arabidopsis Description
At2g45860 [Source:UniProtKB/TrEMBL;Acc:O80833]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.