Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004943.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY18894 | Canola | nucleus | 97.47 | 97.47 |
| CDY37071 | Canola | nucleus | 96.2 | 96.2 |
| CDY27353 | Canola | nucleus | 94.94 | 94.94 |
| AT2G45860.1 | Thale cress | nucleus | 94.94 | 94.94 |
| KRH65065 | Soybean | nucleus | 74.68 | 72.84 |
| KRH48163 | Soybean | nucleus | 73.42 | 71.6 |
| GSMUA_Achr4P11990_001 | Banana | nucleus | 72.15 | 69.51 |
| PGSC0003DMT400000471 | Potato | nucleus | 69.62 | 68.75 |
| Os02t0824400-01 | Rice | nucleus | 68.35 | 68.35 |
| Solyc01g094470.2.1 | Tomato | nucleus | 69.62 | 67.9 |
| EES07787 | Sorghum | nucleus | 67.09 | 66.25 |
| Zm00001d051860_P001 | Maize | nucleus | 67.09 | 66.25 |
| TraesCS6A01G403600.1 | Wheat | nucleus | 65.82 | 65.0 |
| TraesCS6B01G447500.1 | Wheat | nucleus | 65.82 | 65.0 |
| TraesCS6D01G387100.1 | Wheat | nucleus | 65.82 | 65.0 |
| VIT_15s0046g02920.t01 | Wine grape | nucleus | 65.82 | 64.2 |
| HORVU0Hr1G017740.1 | Barley | cytosol, endoplasmic reticulum | 65.82 | 31.33 |
Protein Annotations
| EnsemblPlants:CDX74770 | EnsemblPlantsGene:GSBRNA2T00116740001 | ncoils:Coil | PANTHER:PTHR36745 | ProteinID:CDX74770 | ProteinID:CDX74770.1 |
| SEG:seg | UniParc:UPI00025480D1 | MapMan:35.2 | : | : | : |
Description
BnaA05g05160D
Coordinates
chrLK031802:-:541156..541628
Molecular Weight (calculated)
8898.0 Da
IEP (calculated)
11.105
GRAVY (calculated)
-1.400
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MSKKNNLAKR KTQHEYNLQK EKEIQDKKIK KLQANKNKMK VDGSGKKKKG GFSVGKKKLK TKLTPAAKAK AAQAMELDN
1: MSKKNNLAKR KKQHEYNLQK EKELQDKKIK KLHANKNKMK VDGSGKKKKG GFSVGKKKLK TKLTPTAKAK AAQAMELDN
Arabidopsis Description
At2g45860 [Source:UniProtKB/TrEMBL;Acc:O80833]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.