Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74770 | Canola | nucleus | 97.47 | 97.47 |
| AT2G45860.1 | Thale cress | nucleus | 97.47 | 97.47 |
| CDY37071 | Canola | nucleus | 96.2 | 96.2 |
| CDY27353 | Canola | nucleus | 94.94 | 94.94 |
| KRH65065 | Soybean | nucleus | 75.95 | 74.07 |
| KRH48163 | Soybean | nucleus | 74.68 | 72.84 |
| GSMUA_Achr4P11990_001 | Banana | nucleus | 73.42 | 70.73 |
| PGSC0003DMT400000471 | Potato | nucleus | 70.89 | 70.0 |
| Os02t0824400-01 | Rice | nucleus | 69.62 | 69.62 |
| Solyc01g094470.2.1 | Tomato | nucleus | 70.89 | 69.14 |
| EES07787 | Sorghum | nucleus | 68.35 | 67.5 |
| Zm00001d051860_P001 | Maize | nucleus | 68.35 | 67.5 |
| TraesCS6A01G403600.1 | Wheat | nucleus | 67.09 | 66.25 |
| TraesCS6B01G447500.1 | Wheat | nucleus | 67.09 | 66.25 |
| TraesCS6D01G387100.1 | Wheat | nucleus | 67.09 | 66.25 |
| VIT_15s0046g02920.t01 | Wine grape | nucleus | 67.09 | 65.43 |
| HORVU0Hr1G017740.1 | Barley | cytosol, endoplasmic reticulum | 67.09 | 31.93 |
Protein Annotations
| EnsemblPlants:CDY18894 | EnsemblPlantsGene:GSBRNA2T00006084001 | ncoils:Coil | PANTHER:PTHR36745 | ProteinID:CDY18894 | ProteinID:CDY18894.1 |
| SEG:seg | UniParc:UPI0004EEE7E9 | UniProt:A0A078G080 | MapMan:35.2 | : | : |
Description
BnaC04g04560DBnaC04g04560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G080]
Coordinates
chrLK032090:+:175124..175575
Molecular Weight (calculated)
8925.1 Da
IEP (calculated)
11.131
GRAVY (calculated)
-1.449
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MSKKNNLAKR KKQHEYNLQK EKELQDKKIK KLQANKNKMK VDGSGKKKKG GFSVGKKKLK TKLTPAAKAK AAQAMELDN
1: MSKKNNLAKR KKQHEYNLQK EKELQDKKIK KLHANKNKMK VDGSGKKKKG GFSVGKKKLK TKLTPTAKAK AAQAMELDN
Arabidopsis Description
At2g45860 [Source:UniProtKB/TrEMBL;Acc:O80833]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.