CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74770
CDX82688
CDX83325
CDX89363
CDX94372
CDX95727
CDY18894
CDY21663
CDY27353
CDY30379
CDY37071
CDY43252
CDY50005
CDY50468
CDY50472
CDY50473
CDY52429
CDY53659
CDY55504
CDY56346
CDY60738
CDY65997
CDY67089
CDY69405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56950.1	CDX82688	AT2G19480.1	19228338
AT5G56950.1	CDY21663	AT2G19480.1	19228338
AT5G56950.1	CDY60738	AT2G19480.1	19228338
AT5G56950.1	CDY67089	AT2G19480.1	19228338
AT5G56950.1	CDY69405	AT2G19480.1	19228338
AT5G56950.1	CDX82688	AT2G19480.1	19825649
AT5G56950.1	CDY21663	AT2G19480.1	19825649
AT5G56950.1	CDY60738	AT2G19480.1	19825649
AT5G56950.1	CDY67089	AT2G19480.1	19825649
AT5G56950.1	CDY69405	AT2G19480.1	19825649
AT5G56950.1	CDY30379	AT2G43060.1	21798944
AT5G56950.1	CDY53659	AT2G43060.1	21798944
AT5G56950.1	CDY55504	AT2G43060.1	21798944
AT5G56950.1	CDY56346	AT2G43060.1	21798944
AT5G56950.1	CDX74770	AT2G45860.1	21798944
AT5G56950.1	CDY18894	AT2G45860.1	21798944
AT5G56950.1	CDY27353	AT2G45860.1	21798944
AT5G56950.1	CDY37071	AT2G45860.1	21798944
AT5G56950.1	CDX83325	AT2G47610.1	21798944
AT5G56950.1	CDX95727	AT2G47610.1	21798944
AT5G56950.1	CDY43252	AT3G02190.1	21798944
AT5G56950.1	CDX89363	AT4G26110.1	19228338
AT5G56950.1	CDX94372	AT4G26110.1	19228338
AT5G56950.1	CDY50005	AT4G26110.1	19228338
AT5G56950.1	CDY52429	AT4G26110.1	19228338
AT5G56950.1	CDY65997	AT4G26110.1	19228338
AT5G56950.1	CDY50468	AT5G56950.1	19228338
AT5G56950.1	CDY50472	AT5G56950.1	19228338
AT5G56950.1	CDY50473	AT5G56950.1	19228338
AT5G56950.1	CDY50468	AT5G56950.1	19825649
AT5G56950.1	CDY50472	AT5G56950.1	19825649
AT5G56950.1	CDY50473	AT5G56950.1	19825649

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50472	Canola	nucleus	96.83	97.86
AT5G56950.1	Thale cress	nucleus	94.44	95.45
CDY50473	Canola	nucleus	45.77	92.02
CDX94372	Canola	nucleus	79.89	82.29
CDX89363	Canola	nucleus	79.63	82.24
CDY50005	Canola	nucleus	72.22	77.78
CDY21663	Canola	nucleus	71.43	77.36
Bra002778.1-P	Field mustard	nucleus	83.6	76.14
CDY67089	Canola	nucleus	75.4	76.0
CDY69405	Canola	nucleus	74.6	75.81
KRH37411	Soybean	nucleus	72.49	75.07
CDX82688	Canola	nucleus	75.13	74.74
Solyc12g008940.1.1	Tomato	nucleus	73.81	74.6
VIT_11s0016g02050.t01	Wine grape	nucleus	75.13	73.58
KRH12415	Soybean	endoplasmic reticulum	70.37	73.28
CDY60738	Canola	nucleus	73.81	73.04
CDY65997	Canola	nucleus	16.4	72.94
PGSC0003DMT400055114	Potato	nucleus	71.96	72.73
VIT_09s0002g02330.t01	Wine grape	nucleus	73.28	72.7
PGSC0003DMT400000751	Potato	nucleus	70.63	72.16
Solyc05g018810.2.1	Tomato	nucleus	70.9	71.28
KRH19202	Soybean	nucleus	70.11	70.67
KRH02690	Soybean	nucleus	70.11	69.92
CDX97517	Canola	nucleus	42.06	57.61
CDY23642	Canola	nucleus	44.18	56.8
CDY52429	Canola	nucleus	34.66	44.26
CDX96698	Canola	cytosol	20.63	30.83
CDX83813	Canola	cytosol	20.37	30.43
CDY19242	Canola	cytosol	19.58	28.57
CDY26724	Canola	cytosol	18.25	27.27

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	GO:A0A078IN61	UniProt:A0A078IN61	EnsemblPlants:CDY50468	ProteinID:CDY50468
ProteinID:CDY50468.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00096772001	InterPro:NAP-like_sf
InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	SUPFAM:SSF143113	UniParc:UPI0004EE7155
SEG:seg	:	:	:	:	:

Description

BnaA10g28950DBnaA10g28950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN61]

Coordinates

chrLK032914:-:59044..61964

Molecular Weight (calculated)

43698.2 Da

IEP (calculated)

4.117

GRAVY (calculated)

-1.116

Length

378 amino acids

Sequence
(BLAST)

001: MSNDKDSFNV GDLTAALKDE DRAGLVNALK NKLQNLAGQH SDVLENLTPK IRRRVEVLRE IQGKHDEIEA KFREERAALE AKYQKLYQPL YTKRYEIVNG
101: AIEVEGAQED VKMDQGEEKT AEEKGVPSFW LTALKNNDVI SEEITERDEG ALMYLKDIKW CKIEEPKGFK LEFFFDQNPY FKNTLLTKAY HMIDEDEPLL
201: EKAIGTEIDW YPGKCLTQKI LKKKPKKGAK NAKPITKTED CESFFNFFSP PQVPDDDEDI DEDRAEELQN LMEQDYDIGS TIREKIIPHA VSWFTGEAIE
301: GEEFDIDNDD EDDIDEDEDE DEEDDEDEDE DEEDDDDEDE EEEVSKTKKK PSILHKKGGR PQINDGQQGE RPPECKQQ

Best Arabidopsis Sequence Match ( AT5G56950.1 )
(BLAST)

001: MSNDKDSFNV SDLTSALKDE DRAGLVNALK NKLQNLAGQH SDVLENLTPK IRRRVEVLRE IQGKHDEIET KFREERAALE AKYQKLYQPL YNKRYEIVNG
101: ATEVEGAPED AKMDQGDEKT AEEKGVPSFW LTALKNNDVI SEEITERDEG ALIYLKDIKW CKIEEPKGFK LEFFFDQNPY FKNTLLTKAY HMIDEDEPLL
201: EKAIGTEIDW YPGKCLTQKI LKKKPKKGAK NAKPITKTED CESFFNFFNP PQVPDDDEDI DEERAEELQN LMEQDYDIGS TIREKIIPHA VSWFTGEAIE
301: GEEFEIDNDD EDDIDEDEDE DEEDEDEDEE EDDEDEEEEV SKTKKKPSVL HKKGGRPQVT DDQQGERPPE CKQQ

Arabidopsis Description

NAP1;3Nucleosome assembly protein 1;3 [Source:UniProtKB/Swiss-Prot;Acc:Q94K07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.