CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92684
KRH02690
KRH02999
KRH12415
KRH12895
KRH15988
KRH19202
KRH24214
KRH29218
KRH31699
KRH34092
KRH37411
KRH37867
KRH48163
KRH52367
KRH52368
KRH61699
KRH65065
KRH69083
KRH72345

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26110.1	KRH02999	AT2G24090.1	21798944
AT4G26110.1	KRH72345	AT2G24090.1	21798944
AT4G26110.1	KRH48163	AT2G45860.1	21798944
AT4G26110.1	KRH65065	AT2G45860.1	21798944
AT4G26110.1	KRH12895	AT3G02190.1	21798944
AT4G26110.1	KRH37867	AT3G02190.1	21798944
AT4G26110.1	KRH52367	AT3G02190.1	21798944
AT4G26110.1	KRH52368	AT3G02190.1	21798944
AT4G26110.1	KRH61699	AT3G02190.1	21798944
AT4G26110.1	KRH02690	AT4G26110.1	19228338
AT4G26110.1	KRH12415	AT4G26110.1	19228338
AT4G26110.1	KRH19202	AT4G26110.1	19228338
AT4G26110.1	KRH37411	AT4G26110.1	19228338
AT4G26110.1	KRH02690	AT4G26110.1	21798944
AT4G26110.1	KRH12415	AT4G26110.1	21798944
AT4G26110.1	KRH19202	AT4G26110.1	21798944
AT4G26110.1	KRH37411	AT4G26110.1	21798944
AT4G26110.1	KRH02690	AT5G56950.1	21798944
AT4G26110.1	KRH12415	AT5G56950.1	21798944
AT4G26110.1	KRH19202	AT5G56950.1	21798944
AT4G26110.1	KRH37411	AT5G56950.1	21798944
AT4G26110.1	KRG92684	AT5G60960.1	21297037
AT4G26110.1	KRH34092	AT5G60960.1	21297037
AT5G56950.1	KRH48163	AT2G45860.1	21798944
AT5G56950.1	KRH65065	AT2G45860.1	21798944
AT5G56950.1	KRH15988	AT2G47610.1	21798944
AT5G56950.1	KRH24214	AT2G47610.1	21798944
AT5G56950.1	KRH29218	AT2G47610.1	21798944
AT5G56950.1	KRH31699	AT2G47610.1	21798944
AT5G56950.1	KRH69083	AT2G47610.1	21798944
AT5G56950.1	KRH12895	AT3G02190.1	21798944
AT5G56950.1	KRH37867	AT3G02190.1	21798944
AT5G56950.1	KRH52367	AT3G02190.1	21798944
AT5G56950.1	KRH52368	AT3G02190.1	21798944
AT5G56950.1	KRH61699	AT3G02190.1	21798944
AT5G56950.1	KRH02690	AT4G26110.1	19228338
AT5G56950.1	KRH12415	AT4G26110.1	19228338
AT5G56950.1	KRH19202	AT4G26110.1	19228338
AT5G56950.1	KRH37411	AT4G26110.1	19228338
AT5G56950.1	KRH02690	AT5G56950.1	19228338
AT5G56950.1	KRH12415	AT5G56950.1	19228338
AT5G56950.1	KRH19202	AT5G56950.1	19228338
AT5G56950.1	KRH37411	AT5G56950.1	19228338
AT5G56950.1	KRH02690	AT5G56950.1	19825649
AT5G56950.1	KRH12415	AT5G56950.1	19825649
AT5G56950.1	KRH19202	AT5G56950.1	19825649
AT5G56950.1	KRH37411	AT5G56950.1	19825649

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02690	Soybean	nucleus	95.73	94.72
KRH12415	Soybean	endoplasmic reticulum	74.93	77.41
KRH37411	Soybean	nucleus	74.93	76.99
VIT_11s0016g02050.t01	Wine grape	nucleus	76.0	73.83
VIT_09s0002g02330.t01	Wine grape	nucleus	74.93	73.75
Solyc12g008940.1.1	Tomato	nucleus	73.33	73.53
PGSC0003DMT400000751	Potato	nucleus	71.47	72.43
PGSC0003DMT400055114	Potato	nucleus	71.2	71.39
Solyc05g018810.2.1	Tomato	nucleus	71.2	71.01
KRH23302	Soybean	nucleus	62.67	70.57
CDY50468	Canola	nucleus	70.67	70.11
AT5G56950.1	Thale cress	nucleus	69.6	69.79
AT4G26110.1	Thale cress	nucleus	68.8	69.35
CDX89363	Canola	nucleus	67.2	68.85
CDY50472	Canola	nucleus	68.53	68.72
CDX94372	Canola	nucleus	67.2	68.66
CDY50473	Canola	nucleus	34.4	68.62
Bra013951.1-P	Field mustard	nucleus	66.93	68.58
KRH10020	Soybean	nucleus	65.87	67.49
CDY50005	Canola	nucleus	62.4	66.67
CDY65997	Canola	nucleus	14.13	62.35
Bra002778.1-P	Field mustard	nucleus	65.6	59.28
CDY52429	Canola	nucleus	30.13	38.18
KRH65521	Soybean	cytosol	8.53	32.0
KRH65520	Soybean	nucleus	9.07	30.91
KRH63352	Soybean	nucleus	20.8	29.77
KRH54545	Soybean	nucleus	20.53	29.17
KRH16731	Soybean	cytosol, mitochondrion, nucleus	6.67	28.74
KRH75776	Soybean	cytosol	7.2	28.42
HORVU1Hr1G018340.1	Barley	cytosol	2.13	27.59
KRH03467	Soybean	nucleus	18.67	27.13
KRH56918	Soybean	nucleus	18.13	26.56
KRH49525	Soybean	cytosol	9.87	22.56

Protein Annotations

EntrezGene:100785314	MapMan:12.2.6	Gene3D:3.30.1120.90	EMBL:ACUP02008170	EnsemblPlantsGene:GLYMA_13G105600	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	UniProt:I1LY05	EnsemblPlants:KRH19202	ProteinID:KRH19202	ProteinID:KRH19202.1	InterPro:NAP-like_sf
InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	SUPFAM:SSF143113	UniParc:UPI00023CF924
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:22005414..22008735

Molecular Weight (calculated)

43212.5 Da

IEP (calculated)

4.147

GRAVY (calculated)

-0.997

Length

375 amino acids

Sequence
(BLAST)

001: MSNDKDTFNV ADLTSALNED NRADLVNALK SKIQSLAGQH SDILESLSPN VRKRVEVLRE IQGQHDELEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: ATEVEEGAVK ETTPDGEEDQ EKGVPAFWLT AMKNNEVLAE EISERDEGAL KYLKDIKWSR IENPKGFKLE FFFDTNPYFI NSVLTKTYHM IDEDEPILEK
201: AIGTEIQWHP GKCLTQKILK KKPKKGSKNA KPITKTENCE SFFNFFNPPQ VPEDDEDIDE DAAEELQNQM EQDYDIGSTI RDKIIPHAVS WFTGEAIQGD
301: EFGDLEDDED DEDIEEDDDE EEEEDEDDDD DEDDEEESKT KKKHLRRVEE HSLVMASRVS DLQSASSSRC RRSFM

Best Arabidopsis Sequence Match ( AT4G26110.2 )
(BLAST)

001: MSNDKDSFNV SDLTAALKDE DRAGLVNALK NKLQNLAGQR SDVLENLTPN VRKRVDALRD IQSQHDELEA KFREERAILE AKYQTLYQPL YVKRYEIVNG
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKV CNLSELKFI

Arabidopsis Description

NAP1;1Nucleosome assembly protein 1;1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.