Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH37411 | Soybean | nucleus | 92.56 | 92.05 |
| Solyc12g008940.1.1 | Tomato | nucleus | 77.96 | 75.67 |
| KRH19202 | Soybean | nucleus | 77.41 | 74.93 |
| KRH02690 | Soybean | nucleus | 77.41 | 74.14 |
| VIT_11s0016g02050.t01 | Wine grape | nucleus | 78.79 | 74.09 |
| PGSC0003DMT400055114 | Potato | nucleus | 75.21 | 72.99 |
| PGSC0003DMT400000751 | Potato | nucleus | 74.38 | 72.97 |
| VIT_09s0002g02330.t01 | Wine grape | nucleus | 76.03 | 72.44 |
| Solyc05g018810.2.1 | Tomato | nucleus | 74.66 | 72.07 |
| KRH23302 | Soybean | nucleus | 65.84 | 71.77 |
| CDY50468 | Canola | nucleus | 73.28 | 70.37 |
| AT5G56950.1 | Thale cress | nucleus | 72.18 | 70.05 |
| CDY50472 | Canola | nucleus | 71.63 | 69.52 |
| KRH10020 | Soybean | nucleus | 69.42 | 68.85 |
| CDX89363 | Canola | nucleus | 69.15 | 68.58 |
| Bra013951.1-P | Field mustard | nucleus | 68.87 | 68.31 |
| AT4G26110.1 | Thale cress | nucleus | 69.7 | 68.01 |
| CDX94372 | Canola | nucleus | 67.77 | 67.03 |
| CDY50005 | Canola | nucleus | 63.64 | 65.81 |
| CDY50473 | Canola | nucleus | 33.61 | 64.89 |
| CDY65997 | Canola | nucleus | 14.33 | 61.18 |
| Bra002778.1-P | Field mustard | nucleus | 65.29 | 57.11 |
| CDY52429 | Canola | nucleus | 29.2 | 35.81 |
| KRH65521 | Soybean | cytosol | 8.54 | 31.0 |
| KRH65520 | Soybean | nucleus | 9.37 | 30.91 |
| KRH63352 | Soybean | nucleus | 21.49 | 29.77 |
| KRH54545 | Soybean | nucleus | 21.21 | 29.17 |
| KRH75776 | Soybean | cytosol | 7.44 | 28.42 |
| KRH03467 | Soybean | nucleus | 19.28 | 27.13 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 6.34 | 26.44 |
| KRH56918 | Soybean | nucleus | 18.46 | 26.17 |
| KRH49525 | Soybean | cytosol | 9.92 | 21.95 |
| HORVU1Hr1G018340.1 | Barley | cytosol | 1.65 | 20.69 |
Protein Annotations
| MapMan:12.2.6 | Gene3D:3.30.1120.90 | EntrezGene:547812 | EMBL:ACUP02009316 | ncoils:Coil | EnsemblPlantsGene:GLYMA_15G170700 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | UniProt:I1MH86 | EnsemblPlants:KRH12415 | ProteinID:KRH12415 | ProteinID:KRH12415.1 |
| InterPro:NAP-like_sf | InterPro:NAP_family | PFAM:PF00956 | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF101 | SUPFAM:SSF143113 |
| UniParc:UPI00023D28C1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr15:-:15509593..15513122
Molecular Weight (calculated)
41432.3 Da
IEP (calculated)
4.094
GRAVY (calculated)
-1.061
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNDNIAVTD LTSALNEENR ADLVNALKSK IQSLAGAHSD VLETLSPNVR KRVESLREIQ GKHDELEADF LKEREALEAK YQKLYQPLYT KRYEIVNGVT
101: EVEGAANEST DESEENKEKG VPSFWLNAMK NNDVLAEEIS ERDEGALKFL KDIKWSRIEN PKGFKLDFFF DTNPYFSNTV LTKTYHMIDE DEPILEKAIG
201: TEIEWYPGKC LTQKVLKKKP KKGSKNAKPI TKTESCESFF NFFKPPEVPE DDADIDEDLA EELQNQMEQD YDIGSTLRDK IIPHAVSWFT GEAAQGDEFE
301: DLEDDEDEEE DEDEDEDEED DEDEDDEEED DTKTKKKLSA VKKSGKAQAG DGDGERPPEC KQQ
101: EVEGAANEST DESEENKEKG VPSFWLNAMK NNDVLAEEIS ERDEGALKFL KDIKWSRIEN PKGFKLDFFF DTNPYFSNTV LTKTYHMIDE DEPILEKAIG
201: TEIEWYPGKC LTQKVLKKKP KKGSKNAKPI TKTESCESFF NFFKPPEVPE DDADIDEDLA EELQNQMEQD YDIGSTLRDK IIPHAVSWFT GEAAQGDEFE
301: DLEDDEDEEE DEDEDEDEED DEDEDDEEED DTKTKKKLSA VKKSGKAQAG DGDGERPPEC KQQ
001: MSNDKDSFNV SDLTSALKDE DRAGLVNALK NKLQNLAGQH SDVLENLTPK IRRRVEVLRE IQGKHDEIET KFREERAALE AKYQKLYQPL YNKRYEIVNG
101: ATEVEGAPED AKMDQGDEKT AEEKGVPSFW LTALKNNDVI SEEITERDEG ALIYLKDIKW CKIEEPKGFK LEFFFDQNPY FKNTLLTKAY HMIDEDEPLL
201: EKAIGTEIDW YPGKCLTQKI LKKKPKKGAK NAKPITKTED CESFFNFFNP PQVPDDDEDI DEERAEELQN LMEQDYDIGS TIREKIIPHA VSWFTGEAIE
301: GEEFEIDNDD EDDIDEDEDE DEEDEDEDEE EDDEDEEEEV SKTKKKPSVL HKKGGRPQVT DDQQGERPPE CKQQ
101: ATEVEGAPED AKMDQGDEKT AEEKGVPSFW LTALKNNDVI SEEITERDEG ALIYLKDIKW CKIEEPKGFK LEFFFDQNPY FKNTLLTKAY HMIDEDEPLL
201: EKAIGTEIDW YPGKCLTQKI LKKKPKKGAK NAKPITKTED CESFFNFFNP PQVPDDDEDI DEERAEELQN LMEQDYDIGS TIREKIIPHA VSWFTGEAIE
301: GEEFEIDNDD EDDIDEDEDE DEEDEDEDEE EDDEDEEEEV SKTKKKPSVL HKKGGRPQVT DDQQGERPPE CKQQ
Arabidopsis Description
NAP1;3Nucleosome assembly protein 1;3 [Source:UniProtKB/Swiss-Prot;Acc:Q94K07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.