CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH53154
KRH64753

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18800.1	KRH53154	AT5G09320.1	21798944
AT1G18800.1	KRH64753	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54545	Soybean	nucleus	97.71	96.97
KRH16731	Soybean	cytosol, mitochondrion, nucleus	28.24	85.06
Solyc12g077660.1.1	Tomato	cytosol	18.7	77.78
KRH65521	Soybean	cytosol	29.39	77.0
CDX83813	Canola	cytosol	73.28	75.89
VIT_17s0000g06030.t01	Wine grape	cytosol	77.1	75.37
CDX96698	Canola	cytosol	72.52	75.1
Bra016541.1-P	Field mustard	cytosol	66.79	74.79
KRH03467	Soybean	nucleus	72.9	74.03
KRH56918	Soybean	nucleus	71.76	73.44
AT1G18800.1	Thale cress	cytosol	70.99	72.66
KRH75776	Soybean	cytosol	25.57	70.53
KRH65520	Soybean	nucleus	29.01	69.09
Solyc03g116170.2.1	Tomato	cytosol	66.41	68.77
CDY26724	Canola	cytosol	65.65	67.98
Solyc06g069890.2.1	Tomato	nucleus	67.56	67.82
PGSC0003DMT400083149	Potato	cytosol	67.18	67.43
GSMUA_Achr10P...	Banana	nucleus	65.65	66.93
Solyc12g077670.1.1	Tomato	cytosol	23.28	66.3
GSMUA_Achr4P00490_001	Banana	cytosol	64.12	65.62
GSMUA_Achr7P21000_001	Banana	cytosol	62.98	65.48
GSMUA_Achr6P10690_001	Banana	nucleus	63.36	65.1
CDY19242	Canola	cytosol	63.36	64.09
AT1G74560.3	Thale cress	cytosol	64.5	64.02
Bra025687.1-P	Field mustard	cytosol	56.11	63.09
TraesCS6B01G227700.1	Wheat	nucleus	60.31	62.95
HORVU6Hr1G051930.1	Barley	nucleus	60.69	62.85
TraesCS6D01G185800.1	Wheat	golgi	59.92	62.55
TraesCS6A01G202200.1	Wheat	nucleus	59.92	62.55
EES07035	Sorghum	cytosol	59.92	62.55
Os02t0576700-01	Rice	extracellular	59.16	61.51
Zm00001d050874_P001	Maize	extracellular	58.78	61.35
Zm00001d016935_P001	Maize	extracellular	60.31	61.24
TraesCS2B01G342400.1	Wheat	cytosol	55.34	57.31
TraesCS2D01G323500.1	Wheat	cytosol	55.34	57.31
TraesCS2A01G344900.1	Wheat	cytosol	54.96	56.92
Os04t0459700-02	Rice	nucleus	54.58	55.21
EES12291	Sorghum	cytosol	53.05	54.09
PGSC0003DMT400050243	Potato	nucleus	58.4	53.87
KRH49525	Soybean	cytosol	32.82	52.44
KRH12415	Soybean	endoplasmic reticulum	29.77	21.49
KRH02690	Soybean	nucleus	30.92	21.37
KRH37411	Soybean	nucleus	29.77	21.37
KRH23302	Soybean	nucleus	26.72	21.02
KRH19202	Soybean	nucleus	29.77	20.8
KRH10020	Soybean	nucleus	28.63	20.49

Protein Annotations

EntrezGene:100808081	MapMan:12.2.8	Gene3D:3.30.1120.90	EMBL:ACUP02002667	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G170400
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	UniProt:I1JWV7	EnsemblPlants:KRH63352	ProteinID:KRH63352	ProteinID:KRH63352.1
InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF60	SUPFAM:SSF143113
UniParc:UPI000295C02C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:42657409..42662381

Molecular Weight (calculated)

30220.1 Da

IEP (calculated)

3.914

GRAVY (calculated)

-1.096

Length

262 amino acids

Sequence
(BLAST)

001: MVADRSKKPK VSDKGENLDE IDGELVLSIE KLQEIQDELE KINEEASDKV LEIEQKYNEI RKPVYDKRND IINAIPDFWL TAFLSHPALG DLLNEEDQKI
101: FKYLSSLEVE DFKDVKSGYS ITFNFNANPY FEDTKLVKTY TFLEEGTTKV TATPIKWKEG KGIPNGVNHE KKGNKRAPTD VSFFSWFSDT EQKDDIDDIH
201: DEQVAELIKD DLWPNPLTYF NNEEPDEEEG DEDEADDEGK EDESDDDDDN QEDDDEGEED AK

Best Arabidopsis Sequence Match ( AT1G18800.1 )
(BLAST)

001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE

Arabidopsis Description

NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.