Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g096990.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18800.1 | Solyc01g096990.2.1 | AT5G09320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083149 | Potato | cytosol | 98.85 | 98.85 |
| Solyc12g077660.1.1 | Tomato | cytosol | 18.39 | 76.19 |
| Solyc12g077670.1.1 | Tomato | cytosol | 26.82 | 76.09 |
| Solyc03g116170.2.1 | Tomato | cytosol | 73.56 | 75.89 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 23.37 | 70.11 |
| CDX83813 | Canola | cytosol | 67.43 | 69.57 |
| CDX96698 | Canola | cytosol | 67.05 | 69.17 |
| KRH65521 | Soybean | cytosol | 26.44 | 69.0 |
| Bra016541.1-P | Field mustard | cytosol | 61.3 | 68.38 |
| AT1G18800.1 | Thale cress | cytosol | 67.05 | 68.36 |
| KRH63352 | Soybean | nucleus | 67.82 | 67.56 |
| KRH54545 | Soybean | nucleus | 68.2 | 67.42 |
| VIT_17s0000g06030.t01 | Wine grape | cytosol | 66.28 | 64.55 |
| KRH75776 | Soybean | cytosol | 23.37 | 64.21 |
| KRH03467 | Soybean | nucleus | 62.45 | 63.18 |
| KRH56918 | Soybean | nucleus | 61.69 | 62.89 |
| KRH65520 | Soybean | nucleus | 26.05 | 61.82 |
| Solyc02g067370.2.1 | Tomato | nucleus | 60.15 | 61.81 |
| AT1G74560.3 | Thale cress | cytosol | 60.15 | 59.47 |
| CDY26724 | Canola | cytosol | 57.47 | 59.29 |
| CDY19242 | Canola | cytosol | 56.7 | 57.14 |
| Bra025687.1-P | Field mustard | cytosol | 50.57 | 56.65 |
| KRH49525 | Soybean | cytosol | 27.97 | 44.51 |
| Solyc02g021350.2.1 | Tomato | cytosol | 43.68 | 35.85 |
| Solyc05g018810.2.1 | Tomato | nucleus | 32.57 | 22.61 |
| Solyc12g008940.1.1 | Tomato | nucleus | 32.18 | 22.46 |
| Solyc03g121700.2.1 | Tomato | nucleus | 31.03 | 21.77 |
| Solyc06g062690.2.1 | Tomato | nucleus | 28.35 | 21.2 |
| Solyc08g063000.2.1 | Tomato | nucleus | 28.35 | 21.02 |
Protein Annotations
| EnsemblPlants:Solyc06g069890.2.1 | EnsemblPlantsGene:Solyc06g069890.2 | Gene3D:3.30.1120.90 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:NAP-like_sf |
| InterPro:NAP_family | ncoils:Coil | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF60 | PFAM:PF00956 | SEG:seg |
| SUPFAM:SSF143113 | UniParc:UPI0000E64FF5 | UniProt:K4C8G1 | MapMan:12.2.8 | : | : |
Description
No Description!
Coordinates
chr6:+:43513245..43518528
Molecular Weight (calculated)
30316.4 Da
IEP (calculated)
3.951
GRAVY (calculated)
-1.059
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVDKGKKQK VEEESYIDEK LIFSIEKLQE IQDDLDKINE KASEEVLEIE QKYNKIRKPV YDKRNDIINS ISDFWLTAFL SHPVLGDLLT EEDQKIFKFL
101: SSIEVEDSKD VKFGYSITFN FKPNPFFENS KLSKTYTFLE DGPTKITATP IKWKEGKGIP NGVAQEKKGN KRSHAEESFF TWFSEVNKKD DSDDDENEVL
201: EIQDEVAEII KDDLWPNPLT YFTNEPDEED FEGDEGGDEG EDSEDEGDEE EEEDDEDEDD K
101: SSIEVEDSKD VKFGYSITFN FKPNPFFENS KLSKTYTFLE DGPTKITATP IKWKEGKGIP NGVAQEKKGN KRSHAEESFF TWFSEVNKKD DSDDDENEVL
201: EIQDEVAEII KDDLWPNPLT YFTNEPDEED FEGDEGGDEG EDSEDEGDEE EEEDDEDEDD K
001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
Arabidopsis Description
NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.