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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400021185 Potato nucleus 79.55 85.63
Solyc12g008940.1.1 Tomato nucleus 60.51 56.95
KRH23302 Soybean nucleus 52.84 55.86
Solyc03g121700.2.1 Tomato nucleus 58.52 55.38
VIT_09s0002g02330.t01 Wine grape nucleus 59.66 55.12
KRH10020 Soybean nucleus 56.53 54.37
Solyc05g018810.2.1 Tomato nucleus 57.95 54.26
VIT_11s0016g02050.t01 Wine grape nucleus 59.38 54.15
CDX97517 Canola nucleus 40.91 52.17
Bra027399.1-P Field mustard nucleus 40.34 51.45
CDY23642 Canola nucleus 42.33 50.68
Solyc06g062690.2.1 Tomato nucleus 49.15 49.57
AT3G13782.2 Thale cress cytosol 43.18 47.95
Solyc06g069890.2.1 Tomato nucleus 21.02 28.35
Solyc02g067370.2.1 Tomato nucleus 18.18 25.2
Solyc12g077670.1.1 Tomato cytosol 6.53 25.0
Solyc03g116170.2.1 Tomato cytosol 17.9 24.9
Solyc12g077660.1.1 Tomato cytosol 3.98 22.22
Solyc02g021350.2.1 Tomato cytosol 16.48 18.24
Protein Annotations
MapMan:12.2.6Gene3D:3.30.1120.90ncoils:CoilGO:GO:0000724GO:GO:0003674GO:GO:0003682
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0006139GO:GO:0006259GO:GO:0006334GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0042393GO:GO:0046686UniProt:K4CL82
InterPro:NAP-like_sfInterPro:NAP_familyPFAM:PF00956PANTHER:PTHR11875PANTHER:PTHR11875:SF98SUPFAM:SSF143113
EnsemblPlantsGene:Solyc08g063000.2EnsemblPlants:Solyc08g063000.2.1UniParc:UPI000276B4C4SEG:seg::
Description
No Description!
Coordinates
chr8:+:52499804..52502899
Molecular Weight (calculated)
40664.8 Da
IEP (calculated)
4.107
GRAVY (calculated)
-0.897
Length
352 amino acids
Sequence
(BLAST)
001: MSDQVNTADA TIALSAEDRA DLVNAIKNKL HDLTRDHSAF LDKFPKNIRM RVDVLRDIQS QYNELEAQYL EEKAALEAKF HKLYEPLYNK RCEIVNGVGE
101: AGDESTVGEE TNESAGDKGI PHFWLLAMKN NEIIAKEITE KDEDALQYLK DIKWNRLDDA NGFKLEFFFE TNPYFSNNVL TKTYHMISED EHILENAIGT
201: EIEWFLGKCL TQKILKKKPK KGSNDTKLII KTEECESFFH FFDPPQLPED AEELDEETAE LLQGQMEQDY EIGSTIREKI IPHAVSWFTG EAVPIDDDEE
301: EGDDDEEEED YVEENDEEED DENEDEKGNE ENVKEKMAVK KLEDSKRSQT LN
Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)
001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ
Arabidopsis Description
NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.