Factsheet for Solyc12g008940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g020290.1.1
Solyc01g094470.2.1
Solyc01g097760.2.1
Solyc03g114920.1.1
Solyc05g018810.2.1
Solyc06g050120.2.1
Solyc06g064460.2.1
Solyc06g064470.2.1
Solyc07g005050.2.1
Solyc07g006000.2.1
Solyc10g018810.1.1
Solyc11g042870.1.1
Solyc12g008940.1.1
Solyc12g010350.1.1
Solyc12g042010.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26110.1	Solyc07g006000.2.1	AT2G24090.1	21798944
AT4G26110.1	Solyc12g042010.1.1	AT2G43060.1	21798944
AT4G26110.1	Solyc01g094470.2.1	AT2G45860.1	21798944
AT4G26110.1	Solyc07g005050.2.1	AT3G02190.1	21798944
AT4G26110.1	Solyc12g010350.1.1	AT3G02190.1	21798944
AT4G26110.1	Solyc05g018810.2.1	AT4G26110.1	19228338
AT4G26110.1	Solyc12g008940.1.1	AT4G26110.1	19228338
AT4G26110.1	Solyc05g018810.2.1	AT4G26110.1	21798944
AT4G26110.1	Solyc12g008940.1.1	AT4G26110.1	21798944
AT4G26110.1	Solyc05g018810.2.1	AT5G56950.1	21798944
AT4G26110.1	Solyc12g008940.1.1	AT5G56950.1	21798944
AT4G26110.1	Solyc03g114920.1.1	AT5G60960.1	21297037
AT5G56950.1	Solyc12g042010.1.1	AT2G43060.1	21798944
AT5G56950.1	Solyc01g094470.2.1	AT2G45860.1	21798944
AT5G56950.1	Solyc01g020290.1.1	AT2G47610.1	21798944
AT5G56950.1	Solyc01g097760.2.1	AT2G47610.1	21798944
AT5G56950.1	Solyc06g050120.2.1	AT2G47610.1	21798944
AT5G56950.1	Solyc06g064460.2.1	AT2G47610.1	21798944
AT5G56950.1	Solyc06g064470.2.1	AT2G47610.1	21798944
AT5G56950.1	Solyc10g018810.1.1	AT2G47610.1	21798944
AT5G56950.1	Solyc11g042870.1.1	AT2G47610.1	21798944
AT5G56950.1	Solyc07g005050.2.1	AT3G02190.1	21798944
AT5G56950.1	Solyc12g010350.1.1	AT3G02190.1	21798944
AT5G56950.1	Solyc05g018810.2.1	AT4G26110.1	19228338
AT5G56950.1	Solyc12g008940.1.1	AT4G26110.1	19228338
AT5G56950.1	Solyc05g018810.2.1	AT5G56950.1	19228338
AT5G56950.1	Solyc12g008940.1.1	AT5G56950.1	19228338
AT5G56950.1	Solyc05g018810.2.1	AT5G56950.1	19825649
AT5G56950.1	Solyc12g008940.1.1	AT5G56950.1	19825649

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000751	Potato	nucleus	94.39	95.41
Solyc05g018810.2.1	Tomato	nucleus	81.28	80.85
KRH37411	Soybean	nucleus	76.2	78.08
KRH12415	Soybean	endoplasmic reticulum	75.67	77.96
VIT_11s0016g02050.t01	Wine grape	nucleus	78.61	76.17
VIT_09s0002g02330.t01	Wine grape	nucleus	75.67	74.28
CDY50468	Canola	nucleus	74.6	73.81
KRH19202	Soybean	nucleus	73.53	73.33
CDY50472	Canola	nucleus	72.99	72.99
KRH02690	Soybean	nucleus	73.8	72.82
AT5G56950.1	Thale cress	nucleus	72.19	72.19
Solyc03g121700.2.1	Tomato	nucleus	71.66	72.04
AT4G26110.1	Thale cress	nucleus	70.59	70.97
CDX89363	Canola	nucleus	67.38	68.85
Bra013951.1-P	Field mustard	nucleus	67.11	68.58
CDX94372	Canola	nucleus	66.58	67.85
CDY50473	Canola	nucleus	33.69	67.02
CDY50005	Canola	nucleus	62.83	66.95
Solyc08g063000.2.1	Tomato	nucleus	56.95	60.51
CDY65997	Canola	nucleus	13.64	60.0
Bra002778.1-P	Field mustard	nucleus	65.78	59.28
Solyc06g062690.2.1	Tomato	nucleus	52.41	56.16
CDY52429	Canola	nucleus	31.02	39.19
HORVU1Hr1G018340.1	Barley	cytosol	2.67	34.48
Solyc06g069890.2.1	Tomato	nucleus	22.46	32.18
Solyc02g067370.2.1	Tomato	nucleus	21.12	31.1
Solyc03g116170.2.1	Tomato	cytosol	20.05	29.64
Solyc12g077670.1.1	Tomato	cytosol	7.22	29.35
Solyc12g077660.1.1	Tomato	cytosol	4.28	25.4
Solyc02g021350.2.1	Tomato	cytosol	17.91	21.07

Protein Annotations

EnsemblPlants:Solyc12g008940.1.1	EnsemblPlantsGene:Solyc12g008940.1	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf
InterPro:NAP_family	ncoils:Coil	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	PFAM:PF00956	SEG:seg
SUPFAM:SSF143113	UniParc:UPI00027696DC	UniProt:K4DBY2	MapMan:12.2.6	:	:

Description

No Description!

Coordinates

chr12:-:2247275..2252022

Molecular Weight (calculated)

42595.7 Da

IEP (calculated)

4.096

GRAVY (calculated)

-0.979

Length

374 amino acids

Sequence
(BLAST)

001: MSNPKDNFNV ADLSAALNAG DRADLVNVLK NKLQDLTGKH TNLLENLSPN VRKRVEVLRE IQSQHDELEA KFFEERAALE AKYQKLYQPL YTKRFDIVNG
101: VVEVDGAVTE AAADQEEDKD AEGKGVPDFW FTAMKNNEVL AEEISERDEG ALKFLKDIKW TRIENPKGFK LEFFFDTNPY FKNTVLTKTY HMIDEDEPIL
201: EKAIGTEIEW YPGKCLTQKI LKKKPKKGSK NAKPIMKTEQ CESFFNFFSP PQVPEDEEDI DEDAAEELQG LMEQDYDIGS TIRDKIIPHA VSWFTGEAAE
301: DDFADLEDED DEDDDEVDDE EDEDEDDDED DEDDEDEDDS STKKKSSSAA RKKIGRAHAA DGPAGERPPE CKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.