Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 5
- golgi 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g010130.2.1 | nucleus |
| Solyc01g109700.2.1 | |
| Solyc02g067380.2.1 | nucleus |
| Solyc02g087860.2.1 | nucleus |
| Solyc02g092090.1.1 | |
| Solyc03g043900.1.1 | |
| Solyc04g005220.1.1 | nucleus |
| Solyc04g077480.2.1 | nucleus |
| Solyc05g010610.2.1 | nucleus |
| Solyc06g051120.2.1 | |
| Solyc06g065820.2.1 | |
| Solyc06g070910.2.1 | |
| Solyc09g066360.1.1 | |
| Solyc09g097870.2.1 | nucleus |
| Solyc12g098620.1.1 | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G43060.1 | Solyc04g077480.2.1 | AT1G10120.1 | 23161888 |
| AT2G43060.1 | Solyc04g077480.2.1 | AT1G10120.1 | 23161888 |
| AT2G43060.1 | Solyc01g010130.2.1 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | Solyc04g005220.1.1 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | Solyc05g010610.2.1 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | Solyc01g010130.2.1 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | Solyc04g005220.1.1 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | Solyc05g010610.2.1 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | Solyc06g070910.2.1 | AT1G74500.1 | 21798944 |
| AT2G43060.1 | Solyc06g051120.2.1 | AT3G11100.1 | 23161888 |
| AT2G43060.1 | Solyc09g066360.1.1 | AT3G23240.1 | 23161888 |
| AT2G43060.1 | Solyc09g097870.2.1 | AT3G23690.1 | 23161888 |
| AT2G43060.1 | Solyc12g098620.1.1 | AT3G23690.1 | 23161888 |
| AT2G43060.1 | Solyc09g097870.2.1 | AT3G23690.1 | 23161888 |
| AT2G43060.1 | Solyc12g098620.1.1 | AT3G23690.1 | 23161888 |
| AT2G43060.1 | Solyc02g067380.2.1 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | Solyc02g087860.2.1 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | Solyc02g067380.2.1 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | Solyc02g087860.2.1 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | Solyc06g070910.2.1 | AT3G47710.1 | 23161888 |
| AT2G43060.1 | Solyc02g092090.1.1 | AT3G49760.1 | 23161888 |
| AT2G43060.1 | Solyc03g043900.1.1 | AT3G49760.1 | 23161888 |
| AT2G43060.1 | Solyc01g109700.2.1 | AT4G34530.1 | 21798944 |
| AT2G43060.1 | Solyc06g065820.2.1 | AT5G25190.1 | 23161888 |
| AT2G43060.1 | Solyc02g067380.2.1 | AT5G39860.1 | 23161888 |
| AT2G43060.1 | Solyc02g087860.2.1 | AT5G39860.1 | 23161888 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400014179 | Potato | mitochondrion | 82.68 | 82.03 |
| GSMUA_Achr11P... | Banana | nucleus | 41.73 | 33.54 |
| CDY30379 | Canola | cytosol | 15.75 | 32.26 |
| AT2G43060.1 | Thale cress | nucleus | 35.43 | 28.85 |
| CDY53659 | Canola | nucleus | 34.65 | 28.21 |
| CDY56346 | Canola | nucleus | 29.13 | 27.82 |
| Bra004740.1-P | Field mustard | nucleus | 33.86 | 27.39 |
| CDY55504 | Canola | nucleus | 33.86 | 27.39 |
| Bra037738.1-P | Field mustard | nucleus | 33.86 | 27.22 |
| Os04t0660100-01 | Rice | cytosol | 33.86 | 21.29 |
| Zm00001d026510_P001 | Maize | nucleus | 34.65 | 21.15 |
| Zm00001d001982_P001 | Maize | nucleus | 34.65 | 21.15 |
| TraesCS2D01G499200.1 | Wheat | nucleus, plastid | 33.07 | 21.0 |
| TraesCS2A01G499000.1 | Wheat | plastid | 33.07 | 20.9 |
| TraesCS2B01G527100.1 | Wheat | nucleus, plastid | 33.07 | 20.9 |
| KXG27318 | Sorghum | plastid | 33.86 | 20.77 |
| HORVU2Hr1G111110.2 | Barley | mitochondrion | 33.07 | 20.49 |
Protein Annotations
| EnsemblPlants:Solyc12g042010.1.1 | EnsemblPlantsGene:Solyc12g042010.1 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR33124 |
| PANTHER:PTHR33124:SF31 | PFscan:PS50888 | SEG:seg | SUPFAM:SSF47459 | UniParc:UPI000276A98B | UniProt:K4DEZ5 |
| MapMan:15.5.32 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:41761763..41762146
Molecular Weight (calculated)
14793.2 Da
IEP (calculated)
11.866
GRAVY (calculated)
-0.582
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTRSCIIR SRFAYRFLHS LRKMNQQDKT NSRRVKHAAY ASMASVVGSK RAWSRAVLSK IRNRSLLLKK KKKRRRRSSD EFGELRKIVP GGQLMDFYNL
101: LDETADYINS LTSQVHVMKN ILNLLST
101: LDETADYINS LTSQVHVMKN ILNLLST
001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
Arabidopsis Description
IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.