Factsheet for Os04t0660100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0705500-01
Os02t0797100-00
Os03t0728900-00	nucleus
Os06t0181700-01
Os06t0275600-01	nucleus
Os08t0438100-01
Os08t0487700-00	nucleus
Os09t0474100-01	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43060.1	Os03t0728900-00	AT1G10120.1	23161888
AT2G43060.1	Os03t0728900-00	AT1G10120.1	23161888
AT2G43060.1	Os06t0275600-01	AT1G68920.1	23161888
AT2G43060.1	Os08t0487700-00	AT1G68920.1	23161888
AT2G43060.1	Os09t0474100-01	AT1G68920.1	23161888
AT2G43060.1	Os06t0275600-01	AT1G68920.1	23161888
AT2G43060.1	Os08t0487700-00	AT1G68920.1	23161888
AT2G43060.1	Os09t0474100-01	AT1G68920.1	23161888
AT2G43060.1	Os08t0438100-01	AT1G74660.1	23161888
AT2G43060.1	Os02t0705500-01	AT4G34530.1	21798944
AT2G43060.1	Os02t0797100-00	AT5G25190.1	23161888
AT2G43060.1	Os06t0181700-01	AT5G25190.1	23161888

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G527100.1	Wheat	nucleus, plastid	68.81	69.15
TraesCS2D01G499200.1	Wheat	nucleus, plastid	67.82	68.5
TraesCS2A01G499000.1	Wheat	plastid	66.34	66.67
HORVU2Hr1G111110.2	Barley	mitochondrion	62.87	61.95
KXG27318	Sorghum	plastid	55.94	54.59
Zm00001d001982_P001	Maize	nucleus	55.94	54.33
Zm00001d026510_P001	Maize	nucleus	54.46	52.88
CDY30379	Canola	cytosol	15.35	50.0
GSMUA_Achr11P...	Banana	nucleus	35.64	45.57
CDY56346	Canola	nucleus	26.24	39.85
AT2G43060.1	Thale cress	nucleus	30.69	39.74
Bra037738.1-P	Field mustard	nucleus	30.2	38.61
CDY53659	Canola	nucleus	29.7	38.46
CDY55504	Canola	nucleus	29.7	38.22
Bra004740.1-P	Field mustard	nucleus	29.7	38.22
PGSC0003DMT400014179	Potato	mitochondrion	21.78	34.38
Solyc12g042010.1.1	Tomato	mitochondrion	21.29	33.86

Protein Annotations

MapMan:15.5.32	EntrezGene:4337280	EMBL:AK109923	ProteinID:BAF16055.1	ProteinID:BAS91444.1	ProteinID:CAE02894.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009719	GO:GO:0009741	GO:GO:0009742	GO:GO:0009826
GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0040008	GO:GO:0043565
GO:GO:0046983	EnsemblPlantsGene:Os04g0660100	EnsemblPlants:Os04t0660100-01	PANTHER:PTHR33124	PANTHER:PTHR33124:SF8	UniProt:Q7XR02
UniParc:UPI000021C6E9	RefSeq:XP_015633566.1	SEG:seg	:	:	:

Description

ILI1Binding bHLH Protein1, ILI1 Binding bHLH 1Helix-loop-helix DNA-binding domain containing protein. (Os04t0660100-01);Similar to H0112G12.1 protein. (Os04t0660100-02)

Coordinates

chr4:-:33682229..33683540

Molecular Weight (calculated)

21700.3 Da

IEP (calculated)

12.503

GRAVY (calculated)

-0.354

Length

202 amino acids

Sequence
(BLAST)

001: MDAKRTPPPP TPPNPNPSVI GSGAAADGGG FGRGEAAAAT KHMLAFHFLR ALSRIHRATP VTRRTRTIRR AAYSSMARAA SPRRAWSRAL LGQVRARRSR
101: TLMRRAAVLV RRRVVAAPAP SPASARGVRI IAAGETSAAA RAVPPPPRQQ GEPPRAEALR RLVPGGAGME YSSLLEETAD YLRSLRAQVQ LMQGLVDLFS
201: YQ

Best Arabidopsis Sequence Match ( AT2G43060.1 )
(BLAST)

001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK

Arabidopsis Description

IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.