Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 5
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001888 | |
| PGSC0003DMT400003587 | nucleus |
| PGSC0003DMT400004830 | nucleus |
| PGSC0003DMT400008752 | nucleus |
| PGSC0003DMT400011651 | nucleus |
| PGSC0003DMT400012591 | nucleus |
| PGSC0003DMT400013972 | |
| PGSC0003DMT400017748 | nucleus |
| PGSC0003DMT400022704 | nucleus |
| PGSC0003DMT400026627 | |
| PGSC0003DMT400035406 | |
| PGSC0003DMT400042791 | nucleus |
| PGSC0003DMT400050585 | nucleus |
| PGSC0003DMT400055214 | |
| PGSC0003DMT400067218 | |
| PGSC0003DMT400077199 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G43060.1 | PGSC0003DMT400012591 | AT1G10120.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400012591 | AT1G10120.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400004830 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400022704 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400050585 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400004830 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400022704 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400050585 | AT1G68920.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400077199 | AT3G11100.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400026627 | AT3G23240.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400035406 | AT3G23240.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400011651 | AT3G23690.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400042791 | AT3G23690.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400011651 | AT3G23690.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400042791 | AT3G23690.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400003587 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400008752 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400017748 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400003587 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400008752 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400017748 | AT3G28857.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400013972 | AT3G49760.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400055214 | AT3G49760.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400001888 | AT4G34530.1 | 21798944 |
| AT2G43060.1 | PGSC0003DMT400067218 | AT5G25190.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400003587 | AT5G39860.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400008752 | AT5G39860.1 | 23161888 |
| AT2G43060.1 | PGSC0003DMT400017748 | AT5G39860.1 | 23161888 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g042010.1.1 | Tomato | mitochondrion | 82.03 | 82.68 |
| GSMUA_Achr11P... | Banana | nucleus | 42.19 | 34.18 |
| CDY30379 | Canola | cytosol | 16.41 | 33.87 |
| CDY56346 | Canola | nucleus | 32.81 | 31.58 |
| AT2G43060.1 | Thale cress | nucleus | 37.5 | 30.77 |
| CDY53659 | Canola | nucleus | 36.72 | 30.13 |
| Bra037738.1-P | Field mustard | nucleus | 35.94 | 29.11 |
| Bra004740.1-P | Field mustard | nucleus | 35.16 | 28.66 |
| CDY55504 | Canola | nucleus | 35.16 | 28.66 |
| TraesCS2D01G499200.1 | Wheat | nucleus, plastid | 35.94 | 23.0 |
| TraesCS2A01G499000.1 | Wheat | plastid | 35.94 | 22.89 |
| TraesCS2B01G527100.1 | Wheat | nucleus, plastid | 35.94 | 22.89 |
| KXG27318 | Sorghum | plastid | 35.94 | 22.22 |
| Zm00001d026510_P001 | Maize | nucleus | 35.94 | 22.12 |
| HORVU2Hr1G111110.2 | Barley | mitochondrion | 35.16 | 21.95 |
| Os04t0660100-01 | Rice | cytosol | 34.38 | 21.78 |
| Zm00001d001982_P001 | Maize | nucleus | 35.16 | 21.63 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400014179 | EnsemblPlantsGene:PGSC0003DMG400005560 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR33124 |
| PANTHER:PTHR33124:SF31 | PFscan:PS50888 | PGSC:PGSC0003DMG400005560 | SEG:seg | SUPFAM:SSF47459 | UniParc:UPI0002956409 |
| UniProt:M1A3T7 | MapMan:15.5.32 | : | : | : | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005560]
Coordinates
chr9:+:24775654..24776561
Molecular Weight (calculated)
14782.0 Da
IEP (calculated)
11.881
GRAVY (calculated)
-0.598
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRSSIIRT RFAYRFLHSL RKLNQQEKTN SRRVKHAAYA SMASAVGSKR TWSRAVLSKI RNRSLNRNLL KKKKRRSSEE SGFGELRKLV PGGQVMNFYN
101: LLDETADYIN CLTSQVQVMK NILNLLST
101: LLDETADYIN CLTSQVQVMK NILNLLST
001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
Arabidopsis Description
IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.