Factsheet for PGSC0003DMT400026627

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066360.1.1	Tomato	nucleus	90.86	92.75
PGSC0003DMT400035406	Potato	nucleus	75.13	85.06
CDY35518	Canola	nucleus	56.35	52.86
Bra023745.1-P	Field mustard	nucleus	56.35	52.86
Bra023746.1-P	Field mustard	nucleus	56.35	52.86
PGSC0003DMT400044379	Potato	nucleus	62.44	51.04
AT3G23240.1	Thale cress	nucleus	55.84	50.46
PGSC0003DMT400095521	Potato	nucleus	50.25	50.0
PGSC0003DMT400036837	Potato	nucleus	51.78	49.76
PGSC0003DMT400034873	Potato	nucleus	53.81	47.96
PGSC0003DMT400034490	Potato	nucleus	39.59	46.15
PGSC0003DMT400034489	Potato	nucleus	38.07	44.12
PGSC0003DMT400037877	Potato	nucleus	35.03	43.4
PGSC0003DMT400034487	Potato	nucleus	39.09	43.26
PGSC0003DMT400092292	Potato	nucleus	43.15	42.29
PGSC0003DMT400037826	Potato	nucleus	44.67	39.11
PGSC0003DMT400060732	Potato	nucleus	47.21	33.33
PGSC0003DMT400027839	Potato	nucleus	35.53	26.82
PGSC0003DMT400040921	Potato	nucleus	19.8	25.49

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1ANG6
PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400010285	PGSC:PGSC0003DMG400010285	EnsemblPlants:PGSC0003DMT400026627	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF67	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294C976	SEG:seg

Description

Ethylene response factor 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400010285]

Coordinates

chr9:+:49892331..49893241

Molecular Weight (calculated)

22840.7 Da

IEP (calculated)

4.583

GRAVY (calculated)

-0.652

Length

197 amino acids

Sequence
(BLAST)

001: MDYSSWDNLL FQYNSLPFNV NDTEDMFLFN LVAEGSSQET VNSPSGTYGI KEEEVTSYEE ETEREKEKNY RGVRKRPWGK FAAEIRDSTR NGVRVWLGTF
101: DNAEEAALAY DQAAFAMRGS MAILNFPVEI VKESLSEMKC RFDENCSPVI ELKKRYSMRR KSVSRRNRAR KDVVVFEDLG AEYLEELLIS SESITNW

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.