Factsheet for PGSC0003DMT400035406

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066360.1.1	Tomato	nucleus	83.33	75.13
PGSC0003DMT400026627	Potato	nucleus	85.06	75.13
PGSC0003DMT400036837	Potato	nucleus	51.15	43.41
Bra023745.1-P	Field mustard	nucleus	52.3	43.33
CDY35518	Canola	nucleus	52.3	43.33
Bra023746.1-P	Field mustard	nucleus	52.3	43.33
PGSC0003DMT400034490	Potato	nucleus	40.8	42.01
PGSC0003DMT400095521	Potato	nucleus	47.7	41.92
PGSC0003DMT400044379	Potato	nucleus	58.05	41.91
PGSC0003DMT400034873	Potato	nucleus	52.87	41.63
AT3G23240.1	Thale cress	nucleus	51.72	41.28
PGSC0003DMT400034489	Potato	nucleus	39.08	40.0
PGSC0003DMT400034487	Potato	nucleus	40.8	39.89
PGSC0003DMT400037877	Potato	nucleus	35.63	38.99
PGSC0003DMT400092292	Potato	nucleus	44.25	38.31
PGSC0003DMT400037826	Potato	nucleus	45.98	35.56
PGSC0003DMT400060732	Potato	nucleus	48.28	30.11
PGSC0003DMT400040921	Potato	nucleus	20.69	23.53
PGSC0003DMT400027839	Potato	nucleus	35.06	23.37

Protein Annotations

EntrezGene:102589360	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1B284	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400013608	PGSC:PGSC0003DMG400013608	EnsemblPlants:PGSC0003DMT400035406
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF35	SMART:SM00380
SUPFAM:SSF54171	SignalP:SignalP-noTM	UniParc:UPI000296DC19	RefSeq:XP_006354270.1	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013608]

Coordinates

chr11:-:34307302..34307826

Molecular Weight (calculated)

20287.0 Da

IEP (calculated)

6.755

GRAVY (calculated)

-0.541

Length

174 amino acids

Sequence
(BLAST)

001: MSWYVYFLVV VAEGSSLETV NSSSSYGIKE EEVTSYEEDR EKEKNYRGVR KRQWGKFPTK IRDSTRNGVR VWLGTFDNAE EAVLAYDQAA FAMRGSMAIL
101: NFPVEIVNES LSEIKCRFYE NCSPVIDELK KRYSMRRKSV SRKNRTRKDV VVFEDLGVEY LEELLISSQS ITNW

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.