Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400026627 | Potato | nucleus | 92.75 | 90.86 |
| PGSC0003DMT400035406 | Potato | nucleus | 75.13 | 83.33 |
| Bra023745.1-P | Field mustard | nucleus | 56.99 | 52.38 |
| Bra023746.1-P | Field mustard | nucleus | 56.99 | 52.38 |
| CDY35518 | Canola | nucleus | 56.99 | 52.38 |
| AT3G23240.1 | Thale cress | nucleus | 55.44 | 49.08 |
| Solyc09g089930.1.1 | Tomato | nucleus | 60.62 | 48.75 |
| Solyc11g006050.1.1 | Tomato | nucleus | 50.26 | 48.74 |
| Solyc03g005520.1.1 | Tomato | nucleus | 52.85 | 48.34 |
| Solyc11g011750.1.1 | Tomato | nucleus | 41.45 | 48.19 |
| Solyc11g011740.1.1 | Tomato | nucleus | 38.34 | 42.05 |
| Solyc04g014530.1.1 | Tomato | nucleus | 48.7 | 40.34 |
| Solyc05g051200.1.1 | Tomato | nucleus | 44.56 | 38.39 |
| Solyc05g051180.1.1 | Tomato | nucleus | 38.34 | 35.24 |
| Solyc02g077360.1.1 | Tomato | nucleus | 35.75 | 26.74 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009873 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:K4CUR1 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF67 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc09g066360.1 | EnsemblPlants:Solyc09g066360.1.1 | UniParc:UPI0001D64C38 | SEG:seg | : |
Description
No Description!
Coordinates
chr9:+:64794040..64794621
Molecular Weight (calculated)
22290.1 Da
IEP (calculated)
5.019
GRAVY (calculated)
-0.669
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSSRDDLL FHYNSLPFNV NDTQDMLLYN LVAEGSSQET VNSSSSYGIK EEEVTSYEEE RKDKNYRGVR KRPWGKYAAE IRDSTRNGVR VWLGTFDNAE
101: EAALAYDQAA FAMRGSMAIL NFPVEIVKES LNEMKCRFDG NCSPVIELKK RYSMRRKSVS RKNRARKDVV VFEDLGAEYL EELLISSESI TNW
101: EAALAYDQAA FAMRGSMAIL NFPVEIVKES LNEMKCRFDG NCSPVIELKK RYSMRRKSVS RKNRARKDVV VFEDLGAEYL EELLISSESI TNW
001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
Arabidopsis Description
ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.