Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037826 | Potato | nucleus | 85.71 | 85.33 |
| Solyc11g011750.1.1 | Tomato | nucleus | 37.5 | 50.6 |
| Solyc04g014530.1.1 | Tomato | nucleus | 51.79 | 49.79 |
| Solyc11g011740.1.1 | Tomato | nucleus | 37.95 | 48.3 |
| KRH32176 | Soybean | nucleus | 36.61 | 47.4 |
| Solyc09g066360.1.1 | Tomato | nucleus | 38.39 | 44.56 |
| KRH19551 | Soybean | nucleus | 35.27 | 44.38 |
| Solyc05g051180.1.1 | Tomato | nucleus | 40.18 | 42.86 |
| KRH19550 | Soybean | nucleus | 37.5 | 41.79 |
| KRG95655 | Soybean | nucleus | 38.84 | 41.63 |
| KRH19548 | Soybean | nucleus | 38.84 | 40.85 |
| Solyc11g006050.1.1 | Tomato | nucleus | 35.27 | 39.7 |
| KRH19549 | Soybean | nucleus | 38.39 | 39.09 |
| Solyc03g005520.1.1 | Tomato | nucleus | 35.71 | 37.91 |
| Solyc09g089930.1.1 | Tomato | nucleus | 38.39 | 35.83 |
| Solyc02g077360.1.1 | Tomato | nucleus | 29.02 | 25.19 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:K4C1F1 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF35 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc05g051200.1 | EnsemblPlants:Solyc05g051200.1.1 | UniParc:UPI0001D64C48 | SEG:seg | : |
Description
No Description!
Coordinates
chr5:-:61441957..61442631
Molecular Weight (calculated)
25529.8 Da
IEP (calculated)
5.192
GRAVY (calculated)
-0.637
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPLEIDTS FSHSNLLFLE DESSWSNTHD PFVDIDEYLP IIIPCNDEEI VVESSNTSTT TTTTTTSKVA SIQNIHHDQE EVTSIEKKHE DDQEKHYIGV
101: RKRPWGKYAS EIRDSTRNGI RVWLGTFDTA EEAALAYDQA ALSMRGPWSL LNFPMEHVKK SLENIEYSCK DGLSPAAVLK ATHKTRRVKH KRSSRKKKNE
201: NLENVFVFQD LGVELLEELL MTSS
101: RKRPWGKYAS EIRDSTRNGI RVWLGTFDTA EEAALAYDQA ALSMRGPWSL LNFPMEHVKK SLENIEYSCK DGLSPAAVLK ATHKTRRVKH KRSSRKKKNE
201: NLENVFVFQD LGVELLEELL MTSS
001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
Arabidopsis Description
ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.