CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32176	Soybean	nucleus	66.36	84.39
KRH19551	Soybean	nucleus	68.18	84.27
KRH19550	Soybean	nucleus	71.82	78.61
KRH19548	Soybean	nucleus	75.0	77.46
KRH31709	Soybean	nucleus	39.55	52.1
Solyc11g011750.1.1	Tomato	nucleus	37.73	50.0
PGSC0003DMT400034490	Potato	nucleus	38.18	49.7
KRG95655	Soybean	nucleus	45.45	47.85
PGSC0003DMT400034489	Potato	nucleus	36.82	47.65
PGSC0003DMT400034487	Potato	nucleus	36.82	45.51
Solyc11g011740.1.1	Tomato	nucleus	36.36	45.45
KRH69130	Soybean	nucleus	41.82	45.32
PGSC0003DMT400037877	Potato	nucleus	32.73	45.28
KRG92311	Soybean	nucleus	43.64	44.86
KRG97053	Soybean	nucleus	39.55	44.16
KRH34483	Soybean	nucleus	43.18	43.38
PGSC0003DMT400092292	Potato	nucleus	37.27	40.8
PGSC0003DMT400037826	Potato	nucleus	40.91	40.0
Solyc05g051200.1.1	Tomato	nucleus	39.09	38.39
Solyc05g051180.1.1	Tomato	nucleus	35.91	37.62
KRH67371	Soybean	nucleus	41.36	37.6
Solyc04g014530.1.1	Tomato	nucleus	39.55	37.34
KRG95657	Soybean	nucleus	41.82	36.36
KRH67369	Soybean	nucleus	37.27	35.5
KRG95654	Soybean	nucleus	30.45	35.45
KRH19553	Soybean	nucleus	40.45	34.36
KRH32180	Soybean	nucleus	40.0	32.59
PGSC0003DMT400060732	Potato	nucleus	38.64	30.47
KRH10963	Soybean	nucleus	30.91	25.56
KRH21337	Soybean	nucleus	30.45	25.28

Protein Annotations

EntrezGene:100811486	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:ACUP02008183	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_13G122700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1LYJ4	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH19549	ProteinID:KRH19549
ProteinID:KRH19549.1	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
PANTHER:PTHR31190:SF35	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233CA63	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:23557035..23557697

Molecular Weight (calculated)

24529.7 Da

IEP (calculated)

5.131

GRAVY (calculated)

-0.550

Length

220 amino acids

Sequence
(BLAST)

001: MTPPFFQNPA SDWNMLQQEP SEILFDSMSS NNAVLDPIQD SLSFDMVDFS TTPTEGNHNE AKKLVVKSEL QNNKERSYIG VRKRPWGKFA AEIRDTTRNG
101: ARVWLGTFDS AEAAALAYDQ AAFTMRGDNA VLNFPVKTVK ESLQEIQYSC SNGSSPALAL KERHCIQRKL SLKGRKCKAK ETSSSEDPTP SVLVFEDLGA
201: DYLEQLLSIS DQSARPSYFS

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.