CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32176	Soybean	nucleus	72.64	84.39
KRH19551	Soybean	nucleus	73.13	82.58
KRH19549	Soybean	nucleus	78.61	71.82
KRH19548	Soybean	nucleus	74.63	70.42
KRH31709	Soybean	nucleus	42.79	51.5
PGSC0003DMT400034489	Potato	nucleus	38.81	45.88
Solyc11g011750.1.1	Tomato	nucleus	37.81	45.78
PGSC0003DMT400034490	Potato	nucleus	38.31	45.56
KRH69130	Soybean	nucleus	45.77	45.32
Solyc11g011740.1.1	Tomato	nucleus	39.3	44.89
KRG97053	Soybean	nucleus	43.78	44.67
KRG95655	Soybean	nucleus	46.27	44.5
PGSC0003DMT400034487	Potato	nucleus	39.3	44.38
PGSC0003DMT400037877	Potato	nucleus	33.33	42.14
KRG92311	Soybean	nucleus	44.28	41.59
PGSC0003DMT400092292	Potato	nucleus	40.8	40.8
KRH34483	Soybean	nucleus	43.78	40.18
PGSC0003DMT400037826	Potato	nucleus	44.28	39.56
Solyc05g051200.1.1	Tomato	nucleus	41.79	37.5
KRH67371	Soybean	nucleus	43.78	36.36
KRG95657	Soybean	nucleus	43.78	34.78
Solyc04g014530.1.1	Tomato	nucleus	40.3	34.76
Solyc05g051180.1.1	Tomato	nucleus	35.82	34.29
KRH19553	Soybean	nucleus	43.78	33.98
KRH32180	Soybean	nucleus	43.78	32.59
KRH67369	Soybean	nucleus	36.82	32.03
KRG95654	Soybean	nucleus	29.85	31.75
PGSC0003DMT400060732	Potato	nucleus	40.3	29.03
KRH21337	Soybean	nucleus	33.33	25.28
KRH10963	Soybean	nucleus	32.84	24.81

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:ACUP02008183	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
EnsemblPlantsGene:GLYMA_13G122800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K7LZA1	EnsemblPlants:KRH19550	ProteinID:KRH19550	ProteinID:KRH19550.1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF35	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002965565	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:23571134..23571739

Molecular Weight (calculated)

22541.5 Da

IEP (calculated)

7.952

GRAVY (calculated)

-0.613

Length

201 amino acids

Sequence
(BLAST)

001: MSQDPYEILF DSLPRNDVLD PLHDSLSFDM VDNFSMAPKG NHSKAKQVVV KSEVQNKERS YTGVRKRPWG KYAAEIRDTT RNGTRVWLGT FDTAEAAALA
101: YDQAAFSMRG HNAVLNFPIK RVKDSLQEIQ YSCCNGSSPA LALKERHCIQ RKFSSKAKKC KGKGTSEDPT QSVVVLEDLG VDYLEQLLSV SDQSESPSYW
201: P

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.