CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69130	Soybean	nucleus	79.04	65.02
KRG92311	Soybean	nucleus	67.66	52.8
KRH34483	Soybean	nucleus	65.27	49.77
KRG97053	Soybean	nucleus	58.68	49.75
Bra023745.1-P	Field mustard	nucleus	59.88	47.62
Bra023746.1-P	Field mustard	nucleus	59.88	47.62
CDY35518	Canola	nucleus	59.88	47.62
KRH32176	Soybean	nucleus	49.1	47.4
KRH19551	Soybean	nucleus	49.7	46.63
PGSC0003DMT400036837	Potato	nucleus	55.69	45.37
AT3G23240.1	Thale cress	nucleus	58.68	44.95
Solyc09g089930.1.1	Tomato	nucleus	64.07	44.58
PGSC0003DMT400044379	Potato	nucleus	63.47	43.98
PGSC0003DMT400034873	Potato	nucleus	58.08	43.89
Solyc03g005520.1.1	Tomato	nucleus	55.09	43.6
KRH19550	Soybean	nucleus	51.5	42.79
KRG95655	Soybean	nucleus	51.5	41.15
KRH19549	Soybean	nucleus	52.1	39.55
KRH19548	Soybean	nucleus	49.7	38.97
KRH67371	Soybean	nucleus	53.89	37.19
KRG95657	Soybean	nucleus	53.89	35.57
KRH19553	Soybean	nucleus	55.09	35.52
KRH32180	Soybean	nucleus	55.09	34.07
KRG95654	Soybean	nucleus	38.32	33.86
KRH67369	Soybean	nucleus	46.11	33.33
KRH10963	Soybean	nucleus	43.11	27.07
KRH21337	Soybean	nucleus	42.52	26.79

Protein Annotations

EntrezGene:100785936	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:ACUP02006077	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_10G007000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1L7I1	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH31709	ProteinID:KRH31709	ProteinID:KRH31709.1
EMBL:KT031084	EMBL:KT031275	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
PANTHER:PTHR31190:SF67	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001B36C03	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:687091..688165

Molecular Weight (calculated)

18823.6 Da

IEP (calculated)

8.855

GRAVY (calculated)

-0.405

Length

167 amino acids

Sequence
(BLAST)

001: MDSSSHQLLP FNENDPEDML LYGIITSCQE KKVTINQEQV NKKRSSFRGV RRRPWGKFAA EIRDSTRHGV RVWLGTFDNA EAAALAYDQA AFSMRGSGAV
101: LNFPVEKVKE SLRDMKLDGC SPVVALKRRH SLAAKRKKED VLVFHDLGAD YLEHLLMCSD LPSTTIV

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.