Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036837 | Potato | nucleus | 88.63 | 91.22 |
| PGSC0003DMT400034873 | Potato | nucleus | 89.1 | 85.07 |
| Solyc09g089930.1.1 | Tomato | nucleus | 63.98 | 56.25 |
| KRH31709 | Soybean | nucleus | 43.6 | 55.09 |
| Solyc09g066360.1.1 | Tomato | nucleus | 48.34 | 52.85 |
| KRG92311 | Soybean | nucleus | 52.13 | 51.4 |
| KRH34483 | Soybean | nucleus | 52.13 | 50.23 |
| KRH69130 | Soybean | nucleus | 45.5 | 47.29 |
| Solyc11g011750.1.1 | Tomato | nucleus | 36.97 | 46.99 |
| Solyc11g006050.1.1 | Tomato | nucleus | 42.18 | 44.72 |
| Solyc11g011740.1.1 | Tomato | nucleus | 36.97 | 44.32 |
| Solyc05g051180.1.1 | Tomato | nucleus | 36.02 | 36.19 |
| Solyc04g014530.1.1 | Tomato | nucleus | 39.81 | 36.05 |
| Solyc05g051200.1.1 | Tomato | nucleus | 37.91 | 35.71 |
| Solyc02g077360.1.1 | Tomato | nucleus | 32.23 | 26.36 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:K4BDX6 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF67 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc03g005520.1 | EnsemblPlants:Solyc03g005520.1.1 | UniParc:UPI000276908B | SEG:seg | : |
Description
No Description!
Coordinates
chr3:+:397152..397787
Molecular Weight (calculated)
24001.9 Da
IEP (calculated)
5.717
GRAVY (calculated)
-0.631
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSSSNFLYN LNFNTSSLPF NINDSDEMLL YDLLAQADSD TTTLITNSTT MAKPTPSSKE KNYRGVRRRP WGKFAAEIRD STRNGIRVWL GTFDSAEDAA
101: LAYDQAAFSM RGTSAILNFS VERVVESLHE MKFHVEEGCS PIVSLKMRHS MRKRKFNKKN KVSREVVKDD SNYNVNIVVF EDLGVDYLEQ LLGSSDHSNS
201: SNDDRGSWWD E
101: LAYDQAAFSM RGTSAILNFS VERVVESLHE MKFHVEEGCS PIVSLKMRHS MRKRKFNKKN KVSREVVKDD SNYNVNIVVF EDLGVDYLEQ LLGSSDHSNS
201: SNDDRGSWWD E
001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
Arabidopsis Description
ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.