CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34483	Soybean	nucleus	94.39	92.24
KRH31709	Soybean	nucleus	52.8	67.66
Bra023745.1-P	Field mustard	nucleus	58.88	60.0
Bra023746.1-P	Field mustard	nucleus	58.88	60.0
CDY35518	Canola	nucleus	58.88	60.0
KRH69130	Soybean	nucleus	56.54	59.61
AT3G23240.1	Thale cress	nucleus	57.94	56.88
PGSC0003DMT400036837	Potato	nucleus	52.34	54.63
Solyc09g089930.1.1	Tomato	nucleus	59.35	52.92
KRG97053	Soybean	nucleus	48.6	52.79
PGSC0003DMT400044379	Potato	nucleus	59.35	52.7
Solyc03g005520.1.1	Tomato	nucleus	51.4	52.13
PGSC0003DMT400034873	Potato	nucleus	52.8	51.13
KRH32176	Soybean	nucleus	41.12	50.87
KRH19551	Soybean	nucleus	39.72	47.75
KRG95655	Soybean	nucleus	46.26	47.37
KRH19548	Soybean	nucleus	44.86	45.07
KRH19550	Soybean	nucleus	41.59	44.28
KRH67371	Soybean	nucleus	49.53	43.8
KRH19549	Soybean	nucleus	44.86	43.64
KRG95657	Soybean	nucleus	50.47	42.69
KRH19553	Soybean	nucleus	49.07	40.54
KRH32180	Soybean	nucleus	49.07	38.89
KRH67369	Soybean	nucleus	39.25	36.36
KRG95654	Soybean	nucleus	30.37	34.39
KRH10963	Soybean	nucleus	37.38	30.08
KRH21337	Soybean	nucleus	36.92	29.81

Protein Annotations

EntrezGene:100790598	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:ACUP02012739	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_20G203700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1NI29	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRG92311	ProteinID:KRG92311	ProteinID:KRG92311.1
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF15	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000233DBA9	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:44056804..44057975

Molecular Weight (calculated)

23968.7 Da

IEP (calculated)

5.378

GRAVY (calculated)

-0.625

Length

214 amino acids

Sequence
(BLAST)

001: MDSPSSFFNS PSSDFSSESS SPEAFSWEGY LPFNENDPEE MLLYGMIAGA TTVDHSFERT SSEESEAARK KKSYRGVRRR PWGKFAAEIR DSTRHGMRVW
101: LGTFDSAEAA ALAYDQAAFS MRGSAAILNF PVEIVRESLK EMNYANDSNN EEGCSPVVAL KRKHSLRRKI SVKKNNNSKL QSSTVDNAVV FEDLGPDYLE
201: QLLMSSDHHI PTTF

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.