Factsheet for PGSC0003DMT400036837

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005520.1.1	Tomato	nucleus	91.22	88.63
PGSC0003DMT400034873	Potato	nucleus	93.66	86.88
KRH31709	Soybean	nucleus	45.37	55.69
PGSC0003DMT400044379	Potato	nucleus	64.88	55.19
KRG92311	Soybean	nucleus	54.63	52.34
PGSC0003DMT400026627	Potato	nucleus	49.76	51.78
PGSC0003DMT400035406	Potato	nucleus	43.41	51.15
KRH34483	Soybean	nucleus	54.63	51.14
KRH69130	Soybean	nucleus	45.85	46.31
PGSC0003DMT400095521	Potato	nucleus	44.39	45.96
PGSC0003DMT400034490	Potato	nucleus	37.56	45.56
PGSC0003DMT400037877	Potato	nucleus	34.63	44.65
PGSC0003DMT400034487	Potato	nucleus	38.05	43.82
PGSC0003DMT400034489	Potato	nucleus	36.1	43.53
PGSC0003DMT400092292	Potato	nucleus	40.0	40.8
PGSC0003DMT400037826	Potato	nucleus	38.54	35.11
PGSC0003DMT400040921	Potato	nucleus	22.93	30.72
PGSC0003DMT400060732	Potato	nucleus	39.51	29.03
PGSC0003DMT400027839	Potato	nucleus	34.63	27.2

Protein Annotations

EntrezGene:102592973	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1B4B5	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400014204	PGSC:PGSC0003DMG400014204	EnsemblPlants:PGSC0003DMT400036837	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF67	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295C716
RefSeq:XP_006341690.1	SEG:seg	:	:	:	:

Description

Transcription factor TSRF1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014204]

Coordinates

chr3:-:57091604..57092393

Molecular Weight (calculated)

23015.9 Da

IEP (calculated)

7.719

GRAVY (calculated)

-0.604

Length

205 amino acids

Sequence
(BLAST)

001: MNSSSSNFLY NLNFNTSSLP FNINDSDEML PYGLLAQADS DTTTLVTNST PMAEPTPSSK EKNYRGVRRR PWGKFAAEIR DSTRNGIRVW LGTFDSAEDA
101: ALAYDQAAFS MRGTSAILNF SVERVVESLH EMKFHAEEGC SPIVSLKKRH STRKRKLNKK NKISREVVKD ESNSNVNIVV FEDLGVDYLE QLLSSSDHSN
201: TSKHI

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.