Factsheet for PGSC0003DMT400044379

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g089930.1.1	Tomato	nucleus	93.78	94.17
PGSC0003DMT400036837	Potato	nucleus	55.19	64.88
KRH31709	Soybean	nucleus	43.98	63.47
PGSC0003DMT400034873	Potato	nucleus	57.68	62.9
PGSC0003DMT400026627	Potato	nucleus	51.04	62.44
KRG92311	Soybean	nucleus	52.7	59.35
KRH34483	Soybean	nucleus	53.11	58.45
KRH69130	Soybean	nucleus	48.96	58.13
PGSC0003DMT400035406	Potato	nucleus	41.91	58.05
PGSC0003DMT400095521	Potato	nucleus	43.15	52.53
PGSC0003DMT400034490	Potato	nucleus	34.02	48.52
PGSC0003DMT400034489	Potato	nucleus	33.2	47.06
PGSC0003DMT400034487	Potato	nucleus	34.44	46.63
PGSC0003DMT400092292	Potato	nucleus	38.17	45.77
PGSC0003DMT400037877	Potato	nucleus	29.46	44.65
PGSC0003DMT400037826	Potato	nucleus	36.1	38.67
PGSC0003DMT400060732	Potato	nucleus	37.76	32.62
PGSC0003DMT400027839	Potato	nucleus	29.05	26.82
PGSC0003DMT400040921	Potato	nucleus	17.01	26.8

Protein Annotations

EntrezGene:102592933	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1BG39	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400017231	PGSC:PGSC0003DMG400017231	EnsemblPlants:PGSC0003DMT400044379	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF67	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00029490AB
RefSeq:XP_006354500.1	SEG:seg	:	:	:	:

Description

Transcription factor TSRF1 [Source:PGSC_GENE;Acc:PGSC0003DMG400017231]

Coordinates

chr9:+:56272835..56273818

Molecular Weight (calculated)

27145.3 Da

IEP (calculated)

4.732

GRAVY (calculated)

-0.593

Length

241 amino acids

Sequence
(BLAST)

001: MDSSSCSSQF FYSMNCDLNS SDSSYEWSNF NTQSYLPFNV NDSEEMLLFG VLNAAQETTS ETITSYRVKE EEVSSESEVI EAKPAKEKSY RGVRRRPWGK
101: FAAEIRDSTR NGVRVWLGTF DSAEDAALAY DQAAFSMRGT SAILNFPVET VRESLRDIDM KCHVDDDCSP VVALKKRHSM RKRSTNSKKS SSSSKVVREV
201: KMEKVNNVVV FEDLGADYLE QLLSSSSSDQ SSCDATYFSP W

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.