CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023745.1-P	Field mustard	nucleus	99.52	99.52
Bra023746.1-P	Field mustard	nucleus	99.52	99.52
AT3G23240.1	Thale cress	nucleus	88.1	84.86
KRH31709	Soybean	nucleus	47.62	59.88
KRG92311	Soybean	nucleus	60.0	58.88
KRH34483	Soybean	nucleus	60.95	58.45
Solyc09g066360.1.1	Tomato	nucleus	52.38	56.99
PGSC0003DMT400026627	Potato	nucleus	52.86	56.35
KRH69130	Soybean	nucleus	53.33	55.17
PGSC0003DMT400035406	Potato	nucleus	43.33	52.3
CDY23951	Canola	nucleus	50.48	45.49
CDY72380	Canola	nucleus	50.0	45.06
CDY10783	Canola	nucleus	47.14	44.59
CDY10178	Canola	nucleus	46.19	43.5
CDY09984	Canola	nucleus	45.71	42.11
CDY24746	Canola	nucleus	48.1	42.08
CDY06202	Canola	nucleus	45.71	41.92
CDY47720	Canola	nucleus	39.05	41.62
CDY15417	Canola	nucleus	50.0	39.33
CDX78856	Canola	nucleus	34.76	28.19

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	GO:A0A078HFE5	UniProt:A0A078HFE5	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY35518	ProteinID:CDY35518	ProteinID:CDY35518.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0006952
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009873	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00058558001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF15	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0004EEBC5C	SEG:seg	:	:	:	:

Description

BnaA01g23940DEthylene-responsive transcription factor 1B [Source:Projected from Arabidopsis thaliana (AT3G23240) UniProtKB/Swiss-Prot;Acc:Q8LDC8]

Coordinates

chrLK032353:+:303251..303883

Molecular Weight (calculated)

23896.6 Da

IEP (calculated)

4.702

GRAVY (calculated)

-0.752

Length

210 amino acids

Sequence
(BLAST)

001: MDPYFVQSPF SAFSPEYSPE SFSSSSSNNY SLPFNENDSE EMLLYGLIEQ STQQNVPVKT EEETGTSRKP EKSYRGVRRR PWGKFAAEIR DSTRNGIRVW
101: LGTFESAEEA ALAYDQAAFS MRGSSAILNF PAERVKESLS EIMYNYEDGC SPVVALKRKH SMRRRMTNRK TKDTDFDHSS VKLDNVVVFE DLGEQYLEEL
201: LGSSENSGAW

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.