Factsheet for PGSC0003DMT400013972

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g043900.1.1	Tomato	nucleus	86.76	87.19
KRH77163	Soybean	nucleus	36.27	43.02
KRH28324	Soybean	nucleus	34.8	41.76
PGSC0003DMT400055214	Potato	nucleus	44.61	41.18
KRH58155	Soybean	nucleus	34.31	38.89
KRH04390	Soybean	nucleus	31.37	38.1
PGSC0003DMT400012575	Potato	nucleus	25.49	37.14
VIT_00s0541g00020.t01	Wine grape	nucleus	35.29	37.11
CDY70316	Canola	nucleus	22.06	33.09
Bra031845.1-P	Field mustard	nucleus	21.57	32.35
AT3G49760.1	Thale cress	nucleus	24.51	32.05
CDY05960	Canola	nucleus	28.43	31.18
CDX75671	Canola	nucleus	33.82	28.05
Bra011780.1-P	Field mustard	nucleus	33.82	28.05
CDY51983	Canola	nucleus	23.04	27.98
CDX72653	Canola	nucleus	34.8	27.95
CDX69321	Canola	nucleus	33.82	27.94
Bra036025.1-P	Field mustard	nucleus	25.98	27.89
CDY29581	Canola	nucleus	33.33	27.31
CDY37841	Canola	nucleus	26.47	26.47
AT2G22850.2	Thale cress	nucleus	29.41	26.43
Bra017850.1-P	Field mustard	nucleus	30.88	26.25
CDY68879	Canola	nucleus	22.06	23.08
AT4G37730.1	Thale cress	nucleus	33.33	22.3
Bra024424.1-P	Field mustard	nucleus	24.51	20.08

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102583487	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M1A3K4	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400005476	PGSC:PGSC0003DMG400005476	EnsemblPlants:PGSC0003DMT400013972
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF261	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI00029638CC	RefSeq:XP_006362088.1	InterPro:bZIP	SEG:seg	:	:

Description

Ocs element-binding factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005476]

Coordinates

chr3:-:6566147..6567290

Molecular Weight (calculated)

23577.8 Da

IEP (calculated)

7.766

GRAVY (calculated)

-0.853

Length

204 amino acids

Sequence
(BLAST)

001: MLSTILSSDG LFPNTFPSLY DDFTQWDYIE PTSIFPEPGV ESVFSPMQSP TPEPVISHDS GSGSDKSKPD SPNDSPNPGS DDLAERKRKR MISNRESARR
101: SRMRKQTHLE NLRNQSNRLK LENRDLTNRV QLVTGHYQLV ERNNEMLRAE SILLRQRLEG IHDILITRQL QQQLYNSAFA IRPCNNLYVE QRPHIINQPI
201: INHQ

Best Arabidopsis Sequence Match ( AT4G37730.1 )
(BLAST)

001: MTQKLFIQYS LRSYIVFWKY DQITPWFVHK YQAPTMQFFP FPLLISLISL LEKLLAIMLS TAPAFSFSEP GLVNQFSGFQ TGFTPWEWDC SDLFFVDQMS
101: LEPAIPSPCY GESDTGSVKI NSGSHDMKTG SDESCAGFVK INPRCDDADI SNDLPCSQAD EPDSDDTKQL TAITNFGSGE NNHNRKKMIQ PEMTDERKRK
201: RMESNRESAK RSRMRKQSHI DNLREQVNRL DLENRELGNR LRLVLHQLQR VNSDNNRLVT EQEILRLRLS EMRRILIIRQ LQQQQQWELH NRRMIMTEQN
301: HPHLQ

Arabidopsis Description

AtbZIP7BZIP transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T062]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.