Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g08710.t01 | Wine grape | nucleus | 27.86 | 48.15 |
| KRG88753 | Soybean | nucleus | 40.71 | 39.04 |
| KRH52132 | Soybean | nucleus | 40.0 | 38.89 |
| Bra027855.1-P | Field mustard | nucleus | 35.0 | 32.89 |
| CDY30885 | Canola | nucleus | 35.0 | 32.89 |
| CDY67239 | Canola | nucleus | 35.0 | 32.89 |
| AT1G59530.1 | Thale cress | nucleus | 32.86 | 31.08 |
| PGSC0003DMT400055214 | Potato | nucleus | 40.71 | 25.79 |
| PGSC0003DMT400013972 | Potato | nucleus | 37.14 | 25.49 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| UniProt:M1A1G0 | PFAM:PF00170 | EnsemblPlantsGene:PGSC0003DMG400004916 | PGSC:PGSC0003DMG400004916 | EnsemblPlants:PGSC0003DMT400012575 | ScanProsite:PS00036 |
| PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF362 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000294EA4C |
| InterPro:bZIP | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004916]
Coordinates
chr4:-:66707132..66708066
Molecular Weight (calculated)
16752.9 Da
IEP (calculated)
8.514
GRAVY (calculated)
-0.771
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MMFEDPVHYH LPVLEDVFYS PSDFHDLFSF LETELPVQST SGSETNRLVF SLEERKRRRK ISNRESARRS RLRKKNHLEN VTEQVDRLKA VNRDLKNRLW
101: LATHRCQAAQ SETDRLRLES FVLQQYLVEL HESLNSMQLH
101: LATHRCQAAQ SETDRLRLES FVLQQYLVEL HESLNSMQLH
001: MMSTISPVFS TEPGLLTSVL PAFETSFTPW DISHLFSVFD SLIDPKPVST HDYGSVNQIG SDMSPTDNTD ERKKKRKLSN RESAKRSREK KQKHLEEMSI
101: QLNQLKIQNQ ELKNQLRYVL YHCQRTKMEN DRLLMEHRIL HDKLLNIRQV LMFRQT
101: QLNQLKIQNQ ELKNQLRYVL YHCQRTKMEN DRLLMEHRIL HDKLLNIRQV LMFRQT
Arabidopsis Description
AtbZIP5BZIP5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.