Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0020g04420.t01 | |
| VIT_06s0009g01910.t01 | |
| VIT_08s0040g00470.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG88753 | Soybean | nucleus | 56.79 | 31.51 |
| KRH52132 | Soybean | nucleus | 51.85 | 29.17 |
| PGSC0003DMT400012575 | Potato | nucleus | 48.15 | 27.86 |
| AT1G59530.1 | Thale cress | nucleus | 49.38 | 27.03 |
| CDY30885 | Canola | nucleus | 45.68 | 24.83 |
| Bra027855.1-P | Field mustard | nucleus | 44.44 | 24.16 |
| CDY67239 | Canola | nucleus | 44.44 | 24.16 |
| VIT_00s0541g00020.t01 | Wine grape | nucleus | 56.79 | 23.71 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EMBL:AM482600 | ProteinID:CAN59722 | ProteinID:CAN59722.1 | ProteinID:CCB45730 |
| ProteinID:CCB45730.1 | ncoils:Coil | UniProt:F6H179 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | PFAM:PF00170 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF362 | SMART:SM00338 | SUPFAM:SSF57959 |
| UniParc:UPI0002109A5D | ArrayExpress:VIT_18s0001g08710 | EnsemblPlantsGene:VIT_18s0001g08710 | EnsemblPlants:VIT_18s0001g08710.t01 | InterPro:bZIP | : |
Description
No Description!
Coordinates
chr18:-:7185268..7185664
Molecular Weight (calculated)
9941.1 Da
IEP (calculated)
10.822
GRAVY (calculated)
-0.926
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MISNRESARR SRWRKKKHLE NLSNEVNRLL VQNREYKHRL GSVTHQCHLV GRDNERLTYE YLALRTKLYD LYRILVTMQL Q
001: MFYTNMETVH NCFNDATITG DEIIDILAFL QSDESDNPSG INEVVPVDDK KRRRTISNRE SAKRSRMKKK KRFEELTEEV NRLNIRNQEL KNRLANVVSC
101: GNFISRENNR LKTESVCLEI RLLELYRFLV AMQSPISTSV NYITTLEI
101: GNFISRENNR LKTESVCLEI RLLELYRFLV AMQSPISTSV NYITTLEI
Arabidopsis Description
BZIP4Basic leucine zipper 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ65]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.