Factsheet for VIT_00s0541g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g08710.t01	Wine grape	nucleus	23.71	56.79
KRH77163	Soybean	nucleus	40.72	45.93
KRH28324	Soybean	nucleus	38.14	43.53
KRH04390	Soybean	nucleus	37.11	42.86
KRH58155	Soybean	nucleus	39.18	42.22
AT3G49760.1	Thale cress	nucleus	32.99	41.03
Bra031845.1-P	Field mustard	nucleus	28.35	40.44
CDY70316	Canola	nucleus	28.35	40.44
Solyc02g092090.1.1	Tomato	nucleus	44.33	40.19
PGSC0003DMT400055214	Potato	nucleus	45.36	39.82
Solyc03g043900.1.1	Tomato	nucleus	37.11	35.47
PGSC0003DMT400013972	Potato	nucleus	37.11	35.29
CDY05960	Canola	nucleus	33.51	34.95
CDY37841	Canola	nucleus	36.6	34.8
CDY51983	Canola	nucleus	29.9	34.52
Bra036025.1-P	Field mustard	nucleus	33.51	34.21
Bra017850.1-P	Field mustard	nucleus	42.27	34.17
CDX72653	Canola	nucleus	44.33	33.86
AT2G22850.2	Thale cress	nucleus	38.66	33.04
CDY29581	Canola	nucleus	41.75	32.53
Bra011780.1-P	Field mustard	nucleus	40.21	31.71
CDX75671	Canola	nucleus	40.21	31.71
CDX69321	Canola	nucleus	39.69	31.17
CDY68879	Canola	nucleus	29.9	29.74
Bra024424.1-P	Field mustard	nucleus	33.51	26.1
AT4G37730.1	Thale cress	nucleus	39.69	25.25

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:104878442	MapMan:15.5.4.1	EMBL:AM488616	ProteinID:CAN62264	ProteinID:CAN62264.1
ProteinID:CCB61108	ProteinID:CCB61108.1	ncoils:Coil	UniProt:F6I2E1	EMBL:FN596552	GO:GO:0003674
GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF261	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0001985CD1	ArrayExpress:VIT_00s0541g00020	EnsemblPlantsGene:VIT_00s0541g00020
EnsemblPlants:VIT_00s0541g00020.t01	RefSeq:XP_010647186.1	InterPro:bZIP	:	:	:

Description

No Description!

Coordinates

chrUn:-:31593865..31594595

Molecular Weight (calculated)

22405.2 Da

IEP (calculated)

11.314

GRAVY (calculated)

-1.015

Length

194 amino acids

Sequence
(BLAST)

001: MMSSETMLVS PFPSFEGGFT PWDSQELFSI FQSQEPVRSN SGSDESNRKP VNSNSGSDGP NRKPLHSNSG SDGPNREDSA AEERKRRRMI SNRESARRSR
101: MRKQKHIENL RNQLNQLRIQ NRELTNRLRS FTYHSHLVDS DNVQLRSEAI ILRRKLSEFR QILVFRQLQR QISSAWPCNS VTTSVNEQTP SLIT

Best Arabidopsis Sequence Match ( AT2G22850.2 )
(BLAST)

001: MMSTVPAFTF TEPGLVNQLS DFQTGFTPWE LNCSDLFSTI HLEPVVPSPC SGESDAGSVK INTDFNGFDE SCIGSIKTNS GSDDSNLFHG VPSPQSDELD
101: SKNTKIRSNA TNHNRNKLNR SVLQVTDDRK RKRMESNRES AKRSRMRKQR HIDNLKDEAN RLGLENRELA NRLRIVLYNI ALMCTDNNQL LSEQEILRRR
201: FLEMRQILIF RQLQLNPSLI INHHHMI

Arabidopsis Description

AtbZIP6At2g22850 [Source:UniProtKB/TrEMBL;Acc:O81002]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.