CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58155	Soybean	nucleus	68.45	63.89
KRH77163	Soybean	nucleus	52.98	51.74
KRH28324	Soybean	nucleus	50.6	50.0
KRG88753	Soybean	nucleus	33.93	39.04
VIT_00s0541g00020.t01	Wine grape	nucleus	42.86	37.11
CDY70316	Canola	nucleus	29.76	36.76
Bra031845.1-P	Field mustard	nucleus	29.17	36.03
KRH52132	Soybean	nucleus	29.17	34.03
AT3G49760.1	Thale cress	nucleus	30.95	33.33
Solyc02g092090.1.1	Tomato	nucleus	41.07	32.24
CDY51983	Canola	nucleus	32.14	32.14
CDY05960	Canola	nucleus	35.12	31.72
PGSC0003DMT400013972	Potato	nucleus	38.1	31.37
PGSC0003DMT400055214	Potato	nucleus	40.48	30.77
Solyc03g043900.1.1	Tomato	nucleus	36.31	30.05
CDY37841	Canola	nucleus	35.71	29.41
AT2G22850.2	Thale cress	nucleus	37.5	27.75
Bra036025.1-P	Field mustard	nucleus	30.95	27.37
CDX75671	Canola	nucleus	39.29	26.83
Bra011780.1-P	Field mustard	nucleus	39.29	26.83
CDX69321	Canola	nucleus	39.29	26.72
CDY29581	Canola	nucleus	36.9	24.9
CDX72653	Canola	nucleus	37.5	24.8
Bra017850.1-P	Field mustard	nucleus	35.12	24.58
Bra024424.1-P	Field mustard	nucleus	32.74	22.09
CDY68879	Canola	nucleus	25.6	22.05
AT4G37730.1	Thale cress	nucleus	38.69	21.31

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100809244	MapMan:15.5.4.1	EMBL:ACUP02010408	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G158900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1MVI7
InterPro:IPR004827	EnsemblPlants:KRH04390	ProteinID:KRH04390	ProteinID:KRH04390.1	EMBL:KT031142	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF364	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0001B3742F	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:13673011..13673517

Molecular Weight (calculated)

19649.1 Da

IEP (calculated)

10.951

GRAVY (calculated)

-0.941

Length

168 amino acids

Sequence
(BLAST)

001: MLSLPPSDPF STFSAGFTPW DHDEDSHALF SPKPVSSSSG SDDKSEPNQH VSASSTAMEE RKRRRMISNR ESARRSRMRK QRHLENLRNQ LNKCRVENRE
101: LSNRLQFVLH HLNRLRTENE WLHSERTLLR QKVANLTQIL IFQQFQTFSP AWTCTNNNTS LMTINQVN

Best Arabidopsis Sequence Match ( AT3G49760.1 )
(BLAST)

001: MMSTISPVFS TEPGLLTSVL PAFETSFTPW DISHLFSVFD SLIDPKPVST HDYGSVNQIG SDMSPTDNTD ERKKKRKLSN RESAKRSREK KQKHLEEMSI
101: QLNQLKIQNQ ELKNQLRYVL YHCQRTKMEN DRLLMEHRIL HDKLLNIRQV LMFRQT

Arabidopsis Description

AtbZIP5BZIP5 [Source:UniProtKB/TrEMBL;Acc:A0A178VAJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.