CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017850.1-P	Field mustard	nucleus	92.37	95.83
CDX72653	Canola	nucleus	96.39	94.49
CDX75671	Canola	nucleus	69.88	70.73
CDX69321	Canola	nucleus	69.48	70.04
AT4G37730.1	Thale cress	nucleus	71.08	58.03
VIT_00s0541g00020.t01	Wine grape	nucleus	32.53	41.75
Solyc02g092090.1.1	Tomato	nucleus	32.13	37.38
KRH04390	Soybean	nucleus	24.9	36.9
CDY70316	Canola	nucleus	20.08	36.76
KRH77163	Soybean	nucleus	25.3	36.63
PGSC0003DMT400055214	Potato	nucleus	32.13	36.2
KRH28324	Soybean	nucleus	24.5	35.88
KRH58155	Soybean	nucleus	24.5	33.89
CDY37841	Canola	nucleus	27.71	33.82
Solyc03g043900.1.1	Tomato	nucleus	27.31	33.5
PGSC0003DMT400013972	Potato	nucleus	27.31	33.33
CDY05960	Canola	nucleus	24.1	32.26
CDY51983	Canola	nucleus	20.48	30.36
CDY68879	Canola	nucleus	23.69	30.26
CDY67239	Canola	nucleus	16.06	26.85
CDY30885	Canola	nucleus	15.66	26.17

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078GVQ0	UniProt:A0A078GVQ0	EnsemblPlants:CDY29581	ProteinID:CDY29581
ProteinID:CDY29581.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00043306001	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF261	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EE7C05	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaA03g54260DBnaA03g54260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVQ0]

Coordinates

chrLK032239:+:410670..411419

Molecular Weight (calculated)

29000.4 Da

IEP (calculated)

7.063

GRAVY (calculated)

-0.868

Length

249 amino acids

Sequence
(BLAST)

001: MLSTVPAFSM SEPGLVNQFQ GFQTGFTPWE WDCSDLFSVN QLSLEPAVPS PCFAESDSGL VKIKSGFDDI KPGSDENYTG FIKTKPGFDE AQSSHGVPDE
101: PDSDDPKQWT AIVSLHSGEQ NHNRNKLIQP EMTEEKKRKR MESNRESAKR SRMRKQSHIN NLRNQVNQLD MENRELKNRL QLLTYQLQRV NTDNIQLVAE
201: QDILRLRLSE MRRILMIRRQ QQWELNNRRM IMTEQNPSTI MDHMIYISK

Best Arabidopsis Sequence Match ( AT4G37730.1 )
(BLAST)

001: MTQKLFIQYS LRSYIVFWKY DQITPWFVHK YQAPTMQFFP FPLLISLISL LEKLLAIMLS TAPAFSFSEP GLVNQFSGFQ TGFTPWEWDC SDLFFVDQMS
101: LEPAIPSPCY GESDTGSVKI NSGSHDMKTG SDESCAGFVK INPRCDDADI SNDLPCSQAD EPDSDDTKQL TAITNFGSGE NNHNRKKMIQ PEMTDERKRK
201: RMESNRESAK RSRMRKQSHI DNLREQVNRL DLENRELGNR LRLVLHQLQR VNSDNNRLVT EQEILRLRLS EMRRILIIRQ LQQQQQWELH NRRMIMTEQN
301: HPHLQ

Arabidopsis Description

AtbZIP7BZIP transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T062]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.