CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX85411
CDX86233
CDX92401
CDX95314
CDY06478
CDY23174
CDY49605

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59530.1	CDX73678	AT3G51920.1	17360592
AT1G59530.1	CDX95314	AT3G51920.1	17360592
AT1G59530.1	CDY23174	AT3G51920.1	17360592
AT1G59530.1	CDY06478	AT4G14640.1	17360592
AT1G59530.1	CDX92401	AT5G21274.1	17360592
AT1G59530.1	CDX85411	AT5G49450.1	16709202
AT1G59530.1	CDX86233	AT5G49450.1	16709202
AT1G59530.1	CDY49605	AT5G49450.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67239	Canola	nucleus	96.64	96.64
AT1G59530.1	Thale cress	nucleus	69.8	70.27
VIT_18s0001g08710.t01	Wine grape	nucleus	24.83	45.68
PGSC0003DMT400012575	Potato	nucleus	32.89	35.0
KRH52132	Soybean	nucleus	32.89	34.03
KRG88753	Soybean	nucleus	32.21	32.88
CDY70316	Canola	nucleus	23.49	25.74
CDY51983	Canola	nucleus	26.17	23.21
CDY68879	Canola	nucleus	29.53	22.56
CDY05960	Canola	nucleus	27.52	22.04
CDY37841	Canola	nucleus	28.86	21.08
CDX75671	Canola	nucleus	30.2	18.29
CDX69321	Canola	nucleus	30.2	18.22
CDX72653	Canola	nucleus	27.52	16.14
CDY29581	Canola	nucleus	26.17	15.66

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078GWM2	UniProt:A0A078GWM2	EnsemblPlants:CDY30885	ProteinID:CDY30885
ProteinID:CDY30885.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00046380001	InterPro:IPR004827
PFAM:PF07716	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF362	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0004EE2D23	InterPro:bZIP	SEG:seg	:	:

Description

BnaC09g15210DBnaC09g15210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWM2]

Coordinates

chrLK032263:-:8691..9140

Molecular Weight (calculated)

17104.4 Da

IEP (calculated)

8.028

GRAVY (calculated)

-0.601

Length

149 amino acids

Sequence
(BLAST)

001: MSSTSLEPVR ICFDDATITG DEITEILEFL QSDTSDNPSG SNELEAPVDE RKRKRTISNR ESAKRSRLRK KRRFEDLTEE VNRLKSKNQE LVNQLANVLS
101: CGNAISKENN RLKTESVCLE FRLLELYRFL VAMQSPISTS LNYISKLMI

Best Arabidopsis Sequence Match ( AT1G59530.1 )
(BLAST)

001: MFYTNMETVH NCFNDATITG DEIIDILAFL QSDESDNPSG INEVVPVDDK KRRRTISNRE SAKRSRMKKK KRFEELTEEV NRLNIRNQEL KNRLANVVSC
101: GNFISRENNR LKTESVCLEI RLLELYRFLV AMQSPISTSV NYITTLEI

Arabidopsis Description

BZIP4Basic leucine zipper 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ65]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.