Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86233 | Canola | nucleus | 95.07 | 95.07 |
| CDY49605 | Canola | nucleus | 80.28 | 82.01 |
| AT5G49450.1 | Thale cress | nucleus | 79.58 | 77.93 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078D7Z5 | EnsemblPlants:CDX85411 | ProteinID:CDX85411 | ProteinID:CDX85411.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00143096001 | InterPro:IPR004827 | PFAM:PF07716 |
| ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF351 | SMART:SM00338 | SUPFAM:SSF57959 |
| UniParc:UPI0004EF0FA4 | InterPro:bZIP | : | : | : | : |
Description
BnaC07g27220D
Coordinates
chrLK031841:-:1685856..1686284
Molecular Weight (calculated)
16236.2 Da
IEP (calculated)
8.875
GRAVY (calculated)
-0.846
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MANAEKTSSG SDIDEKKRKR KLSNRESARR SRLKKQKLME DTIIEISTLE RRIKENIERC KVARRRLDSL ESENVALRSE KTWLLSYVSD LENMIATTSL
101: TLTHSGGDDE NVNVEIAAGD CRRRPMHEYS CGSLQTLASF ET
101: TLTHSGGDDE NVNVEIAAGD CRRRPMHEYS CGSLQTLASF ET
001: MANAEKTSSG SDIDEKKRKR KLSNRESARR SRLKKQKLME DTIHEISSLE RRIKENSERC RAVKQRLDSV ETENAGLRSE KIWLSSYVSD LENMIATTSL
101: TLTQSGGGDC VDDQNANAGI AVGDCRRTPW KLSCGSLQPM ASFKT
101: TLTQSGGGDC VDDQNANAGI AVGDCRRTPW KLSCGSLQPM ASFKT
Arabidopsis Description
BZIP1Basic leucine zipper 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.