CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67893
CDX68131
CDX69072
CDX72490
CDX75445
CDX76292
CDX76636
CDX80469
CDX85411
CDX85891
CDX86233
CDX88132
CDX98108
CDY05397
CDY05458
CDY10771
CDY10772
CDY11421
CDY16099
CDY17470
CDY20909
CDY24724
CDY25111
CDY29220
CDY30327
CDY31528
CDY37559
CDY39029
CDY45319
CDY45336
CDY46312
CDY49605
CDY52079
CDY53277
CDY55832

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34590.1	CDX98108	AT1G13600.1	16709202
AT4G34590.1	CDY16099	AT1G13600.1	16709202
AT4G34590.1	CDY37559	AT1G13600.1	16709202
AT4G34590.1	CDY45336	AT1G13600.1	16709202
AT4G34590.1	CDX68131	AT1G75390.1	16709202
AT4G34590.1	CDX85891	AT1G75390.1	16709202
AT4G34590.1	CDY39029	AT1G75390.1	16709202
AT4G34590.1	CDY52079	AT1G75390.1	16709202
AT4G34590.1	CDY20909	AT2G18160.1	16709202
AT4G34590.1	CDY29220	AT2G18160.1	16709202
AT4G34590.1	CDY30327	AT2G18160.1	16709202
AT4G34590.1	CDY46312	AT2G18160.1	16709202
AT4G34590.1	CDY53277	AT2G18160.1	16709202
AT4G34590.1	CDY10771	AT2G31070.1	21245844
AT4G34590.1	CDY10772	AT2G31070.1	21245844
AT4G34590.1	CDY24724	AT2G31070.1	21245844
AT4G34590.1	CDY55832	AT3G54620.1	16709202
AT4G34590.1	CDX67893	AT3G62420.1	16709202
AT4G34590.1	CDX76636	AT3G62420.1	16709202
AT4G34590.1	CDY11421	AT3G62420.1	16709202
AT4G34590.1	CDY25111	AT3G62420.1	16709202
AT4G34590.1	CDX67893	AT3G62420.1	16810321
AT4G34590.1	CDX76636	AT3G62420.1	16810321
AT4G34590.1	CDY11421	AT3G62420.1	16810321
AT4G34590.1	CDY25111	AT3G62420.1	16810321
AT4G34590.1	CDX69072	AT4G34590.1	16709202
AT4G34590.1	CDX72490	AT4G34590.1	16709202
AT4G34590.1	CDX75445	AT4G34590.1	16709202
AT4G34590.1	CDX76292	AT4G34590.1	16709202
AT4G34590.1	CDY17470	AT4G34590.1	16709202
AT4G34590.1	CDY31528	AT4G34590.1	16709202
AT4G34590.1	CDY45319	AT4G34590.1	16709202
AT4G34590.1	CDX80469	AT5G24800.1	16709202
AT4G34590.1	CDX88132	AT5G24800.1	16709202
AT4G34590.1	CDY05397	AT5G24800.1	16709202
AT4G34590.1	CDY05458	AT5G24800.1	16709202
AT4G34590.1	CDX85411	AT5G49450.1	16709202
AT4G34590.1	CDX86233	AT5G49450.1	16709202
AT4G34590.1	CDY49605	AT5G49450.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017664.1-P	Field mustard	nucleus	100.0	100.0
CDX72490	Canola	nucleus	98.69	98.69
CDX75445	Canola	nucleus	90.2	89.61
CDX69072	Canola	nucleus	88.89	88.31
CDX76292	Canola	nucleus	78.43	84.51
CDY17470	Canola	nucleus	78.43	84.51
CDY31528	Canola	nucleus	78.43	84.51
AT4G34590.1	Thale cress	nucleus	84.97	81.76
Solyc04g080740.1.1	Tomato	nucleus	49.02	51.02
PGSC0003DMT400009493	Potato	nucleus	49.67	50.67
KRH51803	Soybean	nucleus, plastid	48.37	48.37
KRH15149	Soybean	nucleus	51.63	47.59
KRH61129	Soybean	nucleus, plastid	47.06	47.06
CDY39029	Canola	nucleus	47.71	46.2
CDY52079	Canola	nucleus	47.06	45.57
CDY29220	Canola	nucleus	45.75	45.16
CDY53277	Canola	nucleus, plastid	47.06	42.86
CDY30327	Canola	nucleus, plastid	46.41	42.26
CDX85891	Canola	nucleus	48.37	42.05
CDY20909	Canola	nucleus	46.41	41.76
CDY46312	Canola	nucleus	45.75	41.67
KRH05862	Soybean	nucleus	51.63	41.15
CDX68131	Canola	nucleus	47.71	40.78
Os09t0306400-01	Rice	nucleus	39.22	39.22
EER96530	Sorghum	nucleus	40.52	38.99
CDX76636	Canola	nucleus	35.29	38.3
CDY11421	Canola	nucleus	34.64	37.59
CDY25111	Canola	nucleus	31.37	35.82
CDX67893	Canola	nucleus	31.37	35.82
TraesCS5B01G176700.1	Wheat	nucleus	35.29	35.29
TraesCS5A01G179000.1	Wheat	nucleus	35.29	35.06
TraesCS5D01G183500.1	Wheat	nucleus	35.29	35.06
HORVU5Hr1G054510.1	Barley	nucleus	34.64	34.42
Zm00001d005578_P001	Maize	nucleus	37.25	33.53
EES14897	Sorghum	nucleus, plastid	37.91	32.95
Zm00001d030577_P001	Maize	nucleus	32.68	31.65
Os08t0357300-01	Rice	cytosol	20.26	27.43
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	17.65	22.31

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078I7C9	UniProt:A0A078I7C9	EnsemblPlants:CDY45319	ProteinID:CDY45319
ProteinID:CDY45319.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00081775001	InterPro:IPR004827	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF229	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002541280	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaA03g52920DBnaA03g52920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7C9]

Coordinates

chrLK032620:+:104624..105335

Molecular Weight (calculated)

17259.3 Da

IEP (calculated)

5.260

GRAVY (calculated)

-0.658

Length

153 amino acids

Sequence
(BLAST)

001: MDSSSSGTTS STIQTSSGPE ENLMEQRKRK RMLSNRESAR RSRKKKQKLL DDLTAQVNQL RKENSEIVTS VSITTQHYLT VEAENSVLRA QLDELSHRLE
101: SLNDIIGFLD NTNGICSNTL SGPESDDFLV SQFNMNMFYM NQPLMASSDA LLY

Best Arabidopsis Sequence Match ( AT4G34590.1 )
(BLAST)

001: MESSSSGTTS STIQTSSGSE ESLMEQRKRK RMLSNRESAR RSRMKKQKLL DDLTAQVNHL KKENTEIVTS VSITTQHYLT VEAENSVLRA QLDELNHRLQ
101: SLNDIIEFLD SSNNNNNNNM GMCSNPLVGL ECDDFFVNQM NMSYIMNQPL MASSDALMY

Arabidopsis Description

BZIP11bZIP transcription factor 11 [Source:UniProtKB/Swiss-Prot;Acc:O65683]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.