Factsheet for PGSC0003DMT400009493

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004821
PGSC0003DMT400009068
PGSC0003DMT400009493
PGSC0003DMT400018832
PGSC0003DMT400019465
PGSC0003DMT400024329
PGSC0003DMT400038493
PGSC0003DMT400040054
PGSC0003DMT400058187
PGSC0003DMT400088166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34590.1	PGSC0003DMT400004821	AT1G13600.1	16709202
AT4G34590.1	PGSC0003DMT400019465	AT1G13600.1	16709202
AT4G34590.1	PGSC0003DMT400009068	AT2G18160.1	16709202
AT4G34590.1	PGSC0003DMT400040054	AT2G18160.1	16709202
AT4G34590.1	PGSC0003DMT400058187	AT2G18160.1	16709202
AT4G34590.1	PGSC0003DMT400024329	AT2G31070.1	21245844
AT4G34590.1	PGSC0003DMT400018832	AT3G62420.1	16709202
AT4G34590.1	PGSC0003DMT400088166	AT3G62420.1	16709202
AT4G34590.1	PGSC0003DMT400018832	AT3G62420.1	16810321
AT4G34590.1	PGSC0003DMT400088166	AT3G62420.1	16810321
AT4G34590.1	PGSC0003DMT400009493	AT4G34590.1	16709202
AT4G34590.1	PGSC0003DMT400038493	AT5G24800.1	16709202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080740.1.1	Tomato	nucleus	92.0	93.88
PGSC0003DMT400009068	Potato	nucleus	57.33	59.72
PGSC0003DMT400079474	Potato	nucleus	60.0	54.22
AT4G34590.1	Thale cress	nucleus	54.67	51.57
PGSC0003DMT400043542	Potato	nucleus	54.67	51.57
Bra034639.1-P	Field mustard	nucleus	48.0	50.7
CDX76292	Canola	nucleus	48.0	50.7
CDX75445	Canola	nucleus	52.0	50.65
CDX72490	Canola	nucleus	51.33	50.33
KRH51803	Soybean	nucleus, plastid	51.33	50.33
CDY17470	Canola	nucleus	47.33	50.0
CDY31528	Canola	nucleus	47.33	50.0
CDX69072	Canola	nucleus	51.33	50.0
CDY45319	Canola	nucleus	50.67	49.67
Bra017664.1-P	Field mustard	nucleus	50.67	49.67
KRH61129	Soybean	nucleus, plastid	50.0	49.02
PGSC0003DMT400058187	Potato	nucleus	53.33	48.19
PGSC0003DMT400040054	Potato	nucleus	42.0	47.73
KRH15149	Soybean	nucleus	51.33	46.39
Bra011545.1-P	Field mustard	nucleus	52.0	43.58
PGSC0003DMT400088166	Potato	nucleus	41.33	43.06
PGSC0003DMT400007165	Potato	nucleus	39.33	42.75
PGSC0003DMT400085559	Potato	nucleus	39.33	42.75
KRH05862	Soybean	nucleus	53.33	41.67
PGSC0003DMT400018832	Potato	nucleus	39.33	40.97
EER96530	Sorghum	nucleus	43.33	40.88
Os09t0306400-01	Rice	nucleus	40.0	39.22
HORVU5Hr1G054510.1	Barley	nucleus	39.33	38.31
TraesCS5A01G179000.1	Wheat	nucleus	39.33	38.31
TraesCS5D01G183500.1	Wheat	nucleus	39.33	38.31
TraesCS5B01G176700.1	Wheat	nucleus	38.67	37.91
Zm00001d005578_P001	Maize	nucleus	39.33	34.71
EES14897	Sorghum	nucleus, plastid	40.67	34.66
Zm00001d030577_P001	Maize	nucleus	36.0	34.18
Os08t0357300-01	Rice	cytosol	25.33	33.63
Zm00001d020025_P001	Maize	endoplasmic reticulum, extracellular	20.67	25.62

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102602332	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M0ZWC7	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400003701	PGSC:PGSC0003DMG400003701	EnsemblPlants:PGSC0003DMT400009493
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF229	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI00029503A5	RefSeq:XP_006341974.1	InterPro:bZIP	SEG:seg	:	:

Description

BZIP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003701]

Coordinates

chr4:+:70149225..70150659

Molecular Weight (calculated)

17478.7 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.893

Length

150 amino acids

Sequence
(BLAST)

001: MATSSGNSSQ IPNNSGCDEV LMVVDERKRK RMQSNRESAR RSRMRKQKHL DDLMCQVTQL KKENSNILSS INMTTQQYGN VEAENSVLRA QMMELTQRLQ
101: SLNEILTYIN NSNNNINNNN NYQEDFQINP WNLMYVNQPI MASADMLYQY

Best Arabidopsis Sequence Match ( AT1G75390.1 )
(BLAST)

001: MNNKTEMGSS TSGNCSSVST TGLANSGSES DLRQRDLIDE RKRKRKQSNR ESARRSRMRK QKHLDDLTAQ VTHLRKENAQ IVAGIAVTTQ HYVTIEAEND
101: ILRAQVLELN HRLQSLNEIV DFVESSSSGF GMETGQGLFD GGLFDGVMNP MNLGFYNQPI MASASTAGDV FNC

Arabidopsis Description

BZIP44bZIP transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:C0Z2L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.