Factsheet for PGSC0003DMT400024329

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400055151

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	PGSC0003DMT400055151	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053410.2.1	Tomato	cytosol	60.13	76.64
KRH27017	Soybean	nucleus	45.34	41.11
KRH22307	Soybean	nucleus	45.34	40.99
KRH25697	Soybean	nucleus	37.62	40.21
CDY10771	Canola	nucleus	38.91	34.87
KRH55819	Soybean	nucleus	37.3	34.83
CDY24724	Canola	nucleus	38.91	34.77
CDY10772	Canola	nucleus	38.59	34.68
Bra018280.1-P	Field mustard	nucleus	38.91	34.67
AT2G31070.1	Thale cress	nucleus	36.98	31.86
PGSC0003DMT400032269	Potato	nucleus	40.19	31.25
PGSC0003DMT400039786	Potato	nucleus	38.59	28.5
TraesCS3B01G164500.1	Wheat	nucleus	39.87	27.56
TraesCS3D01G146900.1	Wheat	nucleus	39.87	27.31
TraesCS3A01G140100.1	Wheat	nucleus	39.87	27.13
Zm00001d008919_P001	Maize	nucleus, plastid	34.73	25.41
PGSC0003DMT400059117	Potato	nucleus	26.37	24.55
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	15.76	22.48
KXG33398	Sorghum	nucleus	32.15	22.17
Zm00001d043423_P001	Maize	nucleus	29.9	21.43
Os01t0213800-01	Rice	mitochondrion	39.23	21.07
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	39.55	20.85
Os01t0755500-01	Rice	cytosol, mitochondrion	29.26	20.4
Zm00001d039371_P001	Maize	mitochondrion	36.66	20.18
PGSC0003DMT400003453	Potato	nucleus, plastid	18.01	19.79
PGSC0003DMT400008673	Potato	nucleus	9.65	19.11
OQU86111	Sorghum	plastid	37.94	18.82
PGSC0003DMT400051253	Potato	nucleus	20.58	18.71
PGSC0003DMT400010453	Potato	nucleus, plastid	18.33	18.69
PGSC0003DMT400063327	Potato	nucleus, plastid	19.61	17.73
PGSC0003DMT400068478	Potato	nucleus	27.33	16.31
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	11.9	15.55
PGSC0003DMT400010380	Potato	nucleus	13.83	15.41
HORVU0Hr1G006890.2	Barley	cytosol	9.65	13.95
PGSC0003DMT400019324	Potato	nucleus	17.04	13.91
Zm00001d012725_P002	Maize	plastid	31.19	13.9
PGSC0003DMT400002153	Potato	nucleus	14.79	12.99
PGSC0003DMT400014572	Potato	nucleus	14.47	11.9

Protein Annotations

EntrezGene:102593018	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009965	GO:GO:0009987	GO:GO:0030154	GO:GO:0045962	GO:GO:0048366	InterPro:IPR017887
UniProt:M1AJX3	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400009406	PGSC:PGSC0003DMG400009406	EnsemblPlants:PGSC0003DMT400024329	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000295EEDA	RefSeq:XP_006348845.1
SEG:seg	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400009406]

Coordinates

chr7:-:49916123..49918648

Molecular Weight (calculated)

35164.7 Da

IEP (calculated)

6.900

GRAVY (calculated)

-0.889

Length

311 amino acids

Sequence
(BLAST)

001: MKRATGGGEI VQVEGGHILR SIGRKDRHSK VYTAKGPRDR RVRLAAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKNAID KLDELPPWNP NQIPSSTNEA
101: DVVVLEQQPE YQLQRELEEN NQSQVNSSNS YMMQGGGGGG GGGEAQQSLG DTMKSFFPMN SGTSLMNFQN YPHEIMPRSS LQNEDLGLSL HTTFHRASTS
201: SHHDDDHSTL FSNQNFEANY PRMASWNLLP QTFFTQNATA FTQREPLQSN FSHLINHHAN WEERPLMNGL IHNQVEISNN SRHFTTDFQV PARIHGEHHE
301: HHSSASPNAH H

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.