Factsheet for PGSC0003DMT400010453

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069460.1.1	Tomato	plastid	78.69	86.33
PGSC0003DMT400063327	Potato	nucleus, plastid	42.95	38.08
PGSC0003DMT400003453	Potato	nucleus, plastid	31.8	34.28
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	23.93	33.49
GSMUA_Achr4P32850_001	Banana	nucleus	31.48	27.99
GSMUA_Achr6P27420_001	Banana	nucleus	26.56	27.09
PGSC0003DMT400051253	Potato	nucleus	22.3	19.88
PGSC0003DMT400024329	Potato	nucleus	18.69	18.33
PGSC0003DMT400008673	Potato	nucleus	8.52	16.56
PGSC0003DMT400059117	Potato	nucleus	17.38	15.87
PGSC0003DMT400032269	Potato	nucleus	20.66	15.75
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	12.13	15.55
PGSC0003DMT400039786	Potato	nucleus	19.67	14.25
PGSC0003DMT400010380	Potato	nucleus	11.8	12.9
PGSC0003DMT400002153	Potato	nucleus	14.43	12.43
PGSC0003DMT400019324	Potato	nucleus	13.11	10.5
PGSC0003DMT400014572	Potato	nucleus	12.46	10.05
PGSC0003DMT400068478	Potato	nucleus	16.07	9.4

Protein Annotations

EntrezGene:102604765	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M0ZY34	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400004082	PGSC:PGSC0003DMG400004082	EnsemblPlants:PGSC0003DMT400010453	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF24	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00029570E6	RefSeq:XP_006354751.1
SEG:seg	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400004082]

Coordinates

chr6:-:51239757..51241311

Molecular Weight (calculated)

34007.3 Da

IEP (calculated)

8.640

GRAVY (calculated)

-0.814

Length

305 amino acids

Sequence
(BLAST)

001: MNTKKQETGG GDTNNSKTSS RTTISTTTCT ATTPSSTCSR QSSSWAAGFK NPRIVRVSRT FGGKDRHSKV CTVKGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVVDWL IDATKDEIDK LPPLQIPPPS LSHFFNMKDH HLDFVDTSET GFGKEKWIAT NDHDHQESSN HNFFQSSNLG MLNTFNNSTN NALISHNWEL
201: PNSNLSLGPF GNYQDQYQQQ NMPFPSGSHH QHQQLYFCPS SSTTSATTLS SLVPPYNSHF HQNSLTPTLQ LISVPVKSSF SLNDNNKGIN LQDHHQHNHK
301: EGSGS

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.