Factsheet for PGSC0003DMT400051253

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g048370.2.1	Tomato	cytosol	73.39	76.99
VIT_10s0003g03910.t01	Wine grape	nucleus	56.43	43.47
OQU89064	Sorghum	cytosol	9.94	42.5
AT4G18390.1	Thale cress	nucleus	41.81	39.18
CDY60877	Canola	nucleus	40.94	39.11
GSMUA_Achr2P12990_001	Banana	nucleus	40.94	37.04
Bra012600.1-P	Field mustard	nucleus	41.23	36.91
GSMUA_Achr4P31520_001	Banana	nucleus	40.64	36.58
HORVU2Hr1G060120.1	Barley	nucleus	43.86	36.41
GSMUA_Achr5P02530_001	Banana	nucleus	40.35	36.13
CDY55633	Canola	nucleus	40.35	36.13
KRH11155	Soybean	nucleus	53.8	36.01
GSMUA_Achr7P01160_001	Banana	nucleus	40.06	35.86
TraesCS2D01G252100.1	Wheat	nucleus	42.98	35.34
TraesCS2B01G265800.1	Wheat	nucleus	42.98	34.67
GSMUA_Achr4P22960_001	Banana	nucleus	38.3	34.29
KRH58674	Soybean	nucleus	47.66	34.1
KRH42567	Soybean	nucleus	46.49	33.97
KRH21093	Soybean	nucleus	52.34	33.65
Zm00001d007868_P001	Maize	nucleus	41.52	32.27
Os03t0785800-01	Rice	nucleus	33.33	31.93
HORVU5Hr1G008340.2	Barley	nucleus	27.49	31.86
TraesCS5D01G040100.1	Wheat	nucleus	27.49	31.86
Os07t0152000-01	Rice	nucleus	41.23	31.69
TraesCS5A01G031900.1	Wheat	nucleus	27.49	31.65
CDY01537	Canola	nucleus	28.36	31.6
Zm00001d018806_P001	Maize	nucleus	40.35	31.58
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	34.8	31.23
EER95875	Sorghum	cytosol, nucleus, peroxisome	41.81	31.02
KXG37409	Sorghum	cytosol	35.09	30.85
HORVU5Hr1G103400.1	Barley	nucleus	35.96	30.75
TraesCS5B01G032000.1	Wheat	nucleus	26.9	30.67
Zm00001d034353_P001	Maize	cytosol	34.5	30.57
TraesCS5A01G423900.1	Wheat	cytosol	35.09	29.63
EES16387	Sorghum	cytosol, nucleus, plastid	26.02	29.47
TraesCS5B01G426200.1	Wheat	nucleus	34.8	29.46
TraesCS5D01G432500.1	Wheat	nucleus	34.5	29.43
Zm00001d022256_P001	Maize	nucleus	26.32	27.86
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	17.25	27.06
TraesCS2A01G251100.1	Wheat	plastid, vacuole	42.69	26.64
PGSC0003DMT400003453	Potato	nucleus, plastid	20.76	25.09
PGSC0003DMT400010453	Potato	nucleus, plastid	19.88	22.3
PGSC0003DMT400063327	Potato	nucleus, plastid	21.64	21.51
PGSC0003DMT400032269	Potato	nucleus	24.27	20.75
PGSC0003DMT400024329	Potato	nucleus	18.71	20.58
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	13.74	19.75
PGSC0003DMT400008673	Potato	nucleus	8.77	19.11
PGSC0003DMT400010380	Potato	nucleus	14.91	18.28
Os12t0616400-01	Rice	cytosol, nucleus, peroxisome	11.11	18.27
PGSC0003DMT400039786	Potato	nucleus	22.22	18.05
PGSC0003DMT400059117	Potato	nucleus	16.08	16.47
PGSC0003DMT400019324	Potato	nucleus	15.79	14.17
PGSC0003DMT400014572	Potato	nucleus	15.2	13.76
PGSC0003DMT400002153	Potato	nucleus	13.45	12.99
PGSC0003DMT400068478	Potato	nucleus	17.25	11.32

Protein Annotations

MapMan:15.5.19	EMBL:AJ561196	ProteinID:CAD91129	ProteinID:CAD91129.1	InterPro:CYC/TB1_R_domain	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009637	GO:GO:0009653	GO:GO:0009791
GO:GO:0009965	GO:GO:0009987	GO:GO:0030154	GO:GO:0045962	GO:GO:0048366	GO:GO:1903508
GO:GO:2000306	InterPro:IPR017887	InterPro:IPR017888	UniProt:M1BRH9	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400019904
PGSC:PGSC0003DMG400019904	EnsemblPlants:PGSC0003DMT400051253	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF2
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000295AAD9	SEG:seg	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400019904]

Coordinates

chr8:-:14146731..14155436

Molecular Weight (calculated)

38445.2 Da

IEP (calculated)

6.957

GRAVY (calculated)

-1.013

Length

342 amino acids

Sequence
(BLAST)

001: MSNKEDEQYH QYDVGEVKKS SDLGGGIGKL YGWPTSRIVR VSRASGGKDR HSKVLTSKGL RDRRVRLSVN TAIQFYDLQD RLGCDQPSKV VEWLLKAAAP
101: LIAELPPLEA FQDTLQLSDE KRSSEPRFDS ADVEMDDDLN YNQQQQQQQQ QPCCSNSETS KGSGLSLSRS DSRVKARERA RERATEKVNT VANHHQNMHP
201: SSSFTELLTG GMNDNNNKSS VNDDQNTPRQ WSTNPLEYFT DNQIYLGNPL RPVSSPMFSI TGDHRPEMQH FPFGGDLVPV VTSTNNEYNL NFSISSSSDF
301: NRGTLQSNSS STLPQYQRYG SYLGSTTEYD NRHSDQKGKG KK

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.