Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55633 | Canola | nucleus | 96.07 | 96.07 |
| CDY60877 | Canola | nucleus | 83.25 | 88.83 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 55.5 | 88.7 |
| AT4G18390.1 | Thale cress | nucleus | 81.15 | 84.93 |
| CDY01537 | Canola | nucleus | 58.9 | 73.29 |
| Bra032365.1-P | Field mustard | nucleus | 39.01 | 46.86 |
| Bra010789.1-P | Field mustard | nucleus | 34.03 | 42.21 |
| PGSC0003DMT400051253 | Potato | nucleus | 36.91 | 41.23 |
| Solyc08g048390.1.1 | Tomato | nucleus | 39.53 | 39.02 |
| Solyc08g048370.2.1 | Tomato | cytosol | 31.94 | 37.42 |
| Bra039158.1-P | Field mustard | nucleus | 18.32 | 22.65 |
| Bra018280.1-P | Field mustard | nucleus | 20.42 | 22.35 |
| Bra030952.1-P | Field mustard | nucleus | 19.63 | 21.74 |
| Bra021586.1-P | Field mustard | nucleus | 19.63 | 21.43 |
| Bra001579.1-P | Field mustard | nucleus | 22.51 | 21.13 |
| Bra005967.1-P | Field mustard | nucleus, plastid | 13.35 | 20.73 |
| Bra027284.1-P | Field mustard | nucleus | 21.99 | 20.69 |
| Bra004212.1-P | Field mustard | nucleus | 17.28 | 19.35 |
| Bra029344.1-P | Field mustard | nucleus, plastid | 15.18 | 19.27 |
| Bra034010.1-P | Field mustard | nucleus | 16.49 | 18.21 |
| Bra004097.1-P | Field mustard | nucleus | 16.49 | 18.16 |
| Bra037579.1-P | Field mustard | nucleus | 12.83 | 17.19 |
| Bra012990.1-P | Field mustard | nucleus | 15.97 | 16.67 |
| Bra038350.1-P | Field mustard | nucleus | 14.4 | 16.42 |
| Bra001032.1-P | Field mustard | nucleus | 18.32 | 13.01 |
| Bra001710.1-P | Field mustard | nucleus | 13.61 | 12.24 |
Protein Annotations
| MapMan:15.5.19 | EnsemblPlantsGene:Bra012600 | EnsemblPlants:Bra012600.1 | EnsemblPlants:Bra012600.1-P | InterPro:CYC/TB1_R_domain | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009653 | GO:GO:0009791 |
| GO:GO:0009965 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0045962 | GO:GO:0048366 | GO:GO:1903508 |
| GO:GO:2000306 | InterPro:IPR017887 | InterPro:IPR017888 | UniProt:M4D7Z0 | PFAM:PF03634 | PFscan:PS51369 |
| PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002540A83 |
| SEG:seg | : | : | : | : | : |
Description
AT4G18390 (E=9e-105) | TCP family transcription factor, putative
Coordinates
chrA03:-:23290387..23291535
Molecular Weight (calculated)
42265.2 Da
IEP (calculated)
7.688
GRAVY (calculated)
-0.979
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIEKLRNES IGDDEMIGDL MKNNNGDVVD NTNNRLSRWH HNSSRIIRVS RASGGKDRHS KVWTSKGPRD RRVRLSVSTA LQFYDLQDRL GYDQPSKAVE
101: WLIKAAEDSI SELPSLNNTN FPMNDDDNQI PTLTGASPTA AAAANSLSKS ACSSNSDTSK NSSGLSLSRS ELRDKARERA RERTAKETKE RDGNNNHHTT
201: SFTDLLNSGS DPVNANRQWM APSSSPAPME YFSSGLILGS GQTHFPIQTN SHPFDHHHHH HQPHQEFSFV PDHLISPAGS NGGGAFNLDF NMSTTSVAST
301: GFSGFNRGTL QSNSTNHHHQ HQSFLANLQR FPSSEGGGGP QFLFGMPAEN QHPHHNNNNN HQFQLYYENG CRNSDQKGKG KN
101: WLIKAAEDSI SELPSLNNTN FPMNDDDNQI PTLTGASPTA AAAANSLSKS ACSSNSDTSK NSSGLSLSRS ELRDKARERA RERTAKETKE RDGNNNHHTT
201: SFTDLLNSGS DPVNANRQWM APSSSPAPME YFSSGLILGS GQTHFPIQTN SHPFDHHHHH HQPHQEFSFV PDHLISPAGS NGGGAFNLDF NMSTTSVAST
301: GFSGFNRGTL QSNSTNHHHQ HQSFLANLQR FPSSEGGGGP QFLFGMPAEN QHPHHNNNNN HQFQLYYENG CRNSDQKGKG KN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.