Factsheet for Bra027284.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68596	Canola	cytosol, nucleus	89.9	94.56
Bra001579.1-P	Field mustard	nucleus	84.73	84.52
Bra021586.1-P	Field mustard	nucleus	71.92	83.43
AT3G15030.1	Thale cress	nucleus	84.24	81.43
Bra030952.1-P	Field mustard	nucleus	50.74	59.71
Solyc12g014140.1.1	Tomato	nucleus	43.1	44.42
VIT_12s0028g02520.t01	Wine grape	nucleus	32.76	43.32
PGSC0003DMT400039786	Potato	nucleus	43.84	42.28
TraesCS3B01G164500.1	Wheat	nucleus	43.35	39.11
TraesCS3D01G146900.1	Wheat	nucleus	43.35	38.77
TraesCS3A01G140100.1	Wheat	nucleus	43.1	38.29
Zm00001d008919_P001	Maize	nucleus, plastid	39.16	37.41
Bra018280.1-P	Field mustard	nucleus	31.03	36.1
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	43.6	30.0
Zm00001d039371_P001	Maize	mitochondrion	41.63	29.91
Os01t0213800-01	Rice	mitochondrion	42.36	29.71
KXG33398	Sorghum	nucleus	32.76	29.49
Os01t0755500-01	Rice	cytosol, mitochondrion	32.02	29.15
Zm00001d043423_P001	Maize	nucleus	30.05	28.11
OQU86111	Sorghum	plastid	40.89	26.48
Bra005967.1-P	Field mustard	nucleus, plastid	15.02	24.8
HORVU0Hr1G006890.2	Barley	cytosol	12.56	23.72
Bra010789.1-P	Field mustard	nucleus	17.73	23.38
Bra032365.1-P	Field mustard	nucleus	17.24	22.01
Bra012600.1-P	Field mustard	nucleus	20.69	21.99
Bra039158.1-P	Field mustard	nucleus	15.52	20.39
Bra029344.1-P	Field mustard	nucleus, plastid	14.29	19.27
Zm00001d012725_P002	Maize	plastid	30.3	17.62
Bra012990.1-P	Field mustard	nucleus	15.76	17.49
Bra004212.1-P	Field mustard	nucleus	14.29	17.01
Bra034010.1-P	Field mustard	nucleus	14.29	16.76
Bra004097.1-P	Field mustard	nucleus	13.55	15.85
Bra038350.1-P	Field mustard	nucleus	12.07	14.63
Bra037579.1-P	Field mustard	nucleus	9.85	14.04
Bra013304.1-P	Field mustard	nucleus, plastid	7.64	12.97
Bra001032.1-P	Field mustard	nucleus	16.5	12.45
Bra001710.1-P	Field mustard	nucleus	11.08	10.59

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra027284	EnsemblPlants:Bra027284.1	EnsemblPlants:Bra027284.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4EES2	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002547B26	SEG:seg	:

Description

AT3G15030 (E=2e-129) TCP4, MEE35 | TCP4 (TCP family transcription factor 4); transcription factor

Coordinates

chrA05:-:20105980..20107200

Molecular Weight (calculated)

44037.8 Da

IEP (calculated)

7.532

GRAVY (calculated)

-0.791

Length

406 amino acids

Sequence
(BLAST)

001: MADEAHNFLH PPAPPPPSSM SHREAANGGC GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH TAIQFYDVQD RLGFDRPSKA VDWLIKKAKA
101: SIDELAQLPP WNPADAMRNA AANAKPRRTA AKTRISPSPP PPSQQQQNQL QFGGFDGAAE HRGNENESSF LPPSMDSDSI ADTIKSFFPV VGSSTEAPPP
201: NQLIHSNYHH HHPPDLLSRT NSHNQDLRLS LHSFPDGPPS LLHHHHSASA STAEPVLFYG QSNPLGYDTS TGGWEQQSIQ RLVAWNSGGA TETGNGGGGG
301: GGGFLFAPPA PSTTSFQPVL GQSPPCSPRG PLQSSYSPMI RAWFDPHHHH QSISTDDLNH HIPHPVHQGE FSSGFRIPAR FQGQEEEQHD GFSNKPSSAS
401: SISRHR

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.