Factsheet for TraesCS3D01G146900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G255000.1
TraesCS4A01G291500.1
TraesCS4B01G060000.1
TraesCS4D01G020300.1
TraesCS4D01G059600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	TraesCS4A01G255000.1	AT2G22840.1	21245844
AT2G31070.1	TraesCS4A01G291500.1	AT2G22840.1	21245844
AT2G31070.1	TraesCS4B01G060000.1	AT2G22840.1	21245844
AT2G31070.1	TraesCS4D01G020300.1	AT2G22840.1	21245844
AT2G31070.1	TraesCS4D01G059600.1	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G164500.1	Wheat	nucleus	97.8	98.67
TraesCS3A01G140100.1	Wheat	nucleus	96.48	95.84
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	97.14	74.75
Zm00001d008919_P001	Maize	nucleus, plastid	69.82	74.59
Os01t0213800-01	Rice	mitochondrion	81.72	64.08
Zm00001d039371_P001	Maize	mitochondrion	77.09	61.95
OQU86111	Sorghum	plastid	78.63	56.94
GSMUA_Achr10P...	Banana	nucleus	31.94	54.72
GSMUA_Achr10P...	Banana	nucleus	29.74	54.22
GSMUA_Achr6P14430_001	Banana	nucleus	26.87	50.83
VIT_19s0014g01680.t01	Wine grape	nucleus	43.83	50.0
KRH27317	Soybean	nucleus	40.53	48.81
PGSC0003DMT400032269	Potato	nucleus	42.51	48.25
Solyc07g062680.1.1	Tomato	nucleus	42.07	47.75
GSMUA_Achr3P03540_001	Banana	nucleus	42.07	47.51
KRH26201	Soybean	nucleus	40.97	46.85
KRH55125	Soybean	nucleus	39.87	46.29
KRH21998	Soybean	nucleus	39.43	45.55
Bra021586.1-P	Field mustard	nucleus	34.58	44.86
KRH22307	Soybean	nucleus	33.7	44.48
KRH27017	Soybean	nucleus	33.48	44.31
AT3G15030.1	Thale cress	nucleus	40.97	44.29
Bra001579.1-P	Field mustard	nucleus	39.43	43.98
Bra027284.1-P	Field mustard	nucleus	38.77	43.35
AT1G53230.1	Thale cress	nucleus	36.56	42.46
Solyc12g014140.1.1	Tomato	nucleus	36.78	42.39
KRH25697	Soybean	nucleus	27.09	42.27
PGSC0003DMT400039786	Potato	nucleus	38.77	41.81
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	42.95	41.4
Solyc07g053410.2.1	Tomato	cytosol	22.25	41.39
Bra030952.1-P	Field mustard	nucleus	30.84	40.58
VIT_12s0028g02520.t01	Wine grape	nucleus	27.31	40.39
PGSC0003DMT400024329	Potato	nucleus	27.31	39.87
Solyc10g018710.1.1	Tomato	nucleus	14.32	38.01
KRH55819	Soybean	nucleus	27.75	37.84
Solyc05g012840.1.1	Tomato	nucleus	18.28	37.22
Bra018280.1-P	Field mustard	nucleus	28.41	36.96
AT2G31070.1	Thale cress	nucleus	29.3	36.84
Solyc05g032780.1.1	Tomato	nucleus	15.2	32.55
Solyc11g045640.1.1	Tomato	nucleus	15.42	31.96
PGSC0003DMT400059117	Potato	nucleus	22.47	30.54
VIT_10s0003g00870.t01	Wine grape	nucleus	23.79	28.27
Solyc02g077250.2.1	Tomato	nucleus	21.81	27.97
TraesCS5D01G432500.1	Wheat	nucleus	22.69	25.69
TraesCS5D01G040100.1	Wheat	nucleus	16.52	25.42
TraesCS3D01G298900.1	Wheat	nucleus	14.54	24.0
TraesCS2D01G252100.1	Wheat	nucleus	20.7	22.6
PGSC0003DMT400068478	Potato	nucleus	22.47	19.58
TraesCS1D01G335300.1	Wheat	nucleus	13.44	19.49
TraesCS5D01G213400.1	Wheat	cytosol	11.45	18.91
TraesCS5D01G002300.1	Wheat	nucleus	10.57	18.18
TraesCS2D01G019300.1	Wheat	extracellular	9.25	17.8
Solyc10g008780.1.1	Tomato	nucleus	22.69	17.7
TraesCS4D01G040100.1	Wheat	nucleus	12.56	16.19

Protein Annotations

EnsemblPlants:TraesCS3D01G146900.1	EnsemblPlantsGene:TraesCS3D01G146900	InterPro:IPR017887	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	PANTHER:PTHR31072
PANTHER:PTHR31072:SF66	PFAM:PF03634	PFscan:PS51369	SEG:seg	MapMan:15.5.19	:

Description

No Description!

Coordinates

chr3D:+:111206635..111207999

Molecular Weight (calculated)

47553.5 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.660

Length

454 amino acids

Sequence
(BLAST)

001: MGDAGQSHHH HGLQTQLLSF GGAGSHHHHM HQFTAQAQAP AASQTRARGG RGGEMVPATP ARVRGGGGGE IVAVQGGHIV RSTGRKDRHS KVCTARGPRD
101: RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIKNAKDAI DNLDTLPAWQ PTAVAPASSN AAAPPSSSTQ PDSADNSDDQ AQAITIAHSS FDFAGSGGAG
201: GATGGISFLP PSLDSDSIAD TIKSFFPMGG TAGGEPSSST VAAHSSAMGF QGYTPDLLSR TGSQSQELRL SLQPLPDPMF HHHHHQQEQH RPDGHDGNGT
301: AQQTLFPGAA SYSFGGGGAM WAEQAASQRM MPWNVPDPGG GSTGGYLFNV SQQAAHMQAA LSGQSQFFFQ RGPLQSSNQP SDRGWPETVE ADDNNPMQQQ
401: QQHQGGLNPS VSAIGFGPGV SFSGFRVPAR MQGNEEHNGG NGDKPPSVSS ASHH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.